Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq46208 96.9 5e-15 >seq46208 Length=8390 Score = 96.9 bits (106), Expect = 5e-15 Identities = 229/340 (67%), Gaps = 7/340 (2%) Strand=Plus/Minus Query 180518 TTTTTAGATTCTTGTGGATTTCATTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGA 180577 |||||||||||| |||||| || |||| || ||| | || ||| | |||||| Sbjct 5972 TTTTTAGATTCTATGGGATTTACCAACAGAGAAGAGGGAGATCTCGGTCCAGTATATGGA 5913 Query 180578 TTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCA 180636 || |||||| | ||| ||||| |||| | | | | || | || |||| ||| | Sbjct 5912 TTCCAATGGCGTCATTATGGAGCGGAATACAATAA-TATGCACACTGACTACCAAGGGAA 5854 Query 180637 AGGTATAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGC-CGAA 180695 ||| | ||||| | || ||||| | ||||||||| |||| ||| || | || Sbjct 5853 AGGAGTTGACCAGCTTTCTCATGTTATCAAGACTATAAAAGATAA-CCCAAACGATCGTC 5795 Query 180696 GAATAATCATAGATAGTTGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTC 180755 | ||| | || |||||| | | | || ||||||||||| || |||| Sbjct 5794 GTATATTAATGTGCGCCTGGAATCCTAAAGATATTCCCCTGATGGCTCTTCCCCCTTGTC 5735 Query 180756 ACTGTTTGGTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAAA 180815 ||||||||| |||||||||||| ||| | | || ||| ||||| |||||| Sbjct 5734 ACTGTTTGGCTCAATTTTATGTTGCCAATGG---TGAACTATCTTGTCAATTATATCAAC 5678 Query 180816 GATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGC 180855 ||||||||||| | |||||||| ||||| | ||| || || Sbjct 5677 GATCTGCAGATATGGGATTAGGAGTACCTTTTAACATAGC 5638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654598795485000