Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq46208 113 6e-20 >seq46208 Length=8390 Score = 113 bits (124), Expect = 6e-20 Identities = 335/508 (66%), Gaps = 19/508 (4%) Strand=Plus/Minus Query 171700 GAATTTTTAGATT-TATGCGGGTTTACTGAAAGAAAAGAAGGTGATTTAGGTCCAATTTA 171758 ||||||||||||| |||| || ||||| | ||| |||| || ||| | |||||| | || Sbjct 5975 GAATTTTTAGATTCTATG-GGATTTACCAACAGAGAAGAGGGAGATCTCGGTCCAGTATA 5917 Query 171759 TGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTGTTATACAGATTACACAGG 171818 |||||| |||||| | ||| || || |||| | | | || || ||| ||| Sbjct 5916 TGGATTCCAATGGCGTCATTATGGAGCGGAATACAATAATATGCACACTGACTACCAAGG 5857 Query 171819 ACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTACAAAACAACCCAGAAAGTAG 171878 ||||||| ||||| | ||| ||| || ||| || || | |||||| | | | Sbjct 5856 GAAAGGAGTTGACCAGCTTTCTCATGTTATCAAGACTATAAAAGATAACCCAAACGATCG 5797 Query 171879 AAGGATGTTAATTGATAGTTGGAATGTACCTCAACTTGATAAA------ATGGTTCTTCC 171932 | || ||||| |||||| ||| || |||| |||| |||||| Sbjct 5796 TCGTATATTAATGTGCGCCTGGAAT---CCTAAA---GATATTCCCCTGATGGCTCTTCC 5743 Query 171933 TCCTTGCCACACTTTAGCACAATTTTATGTCAGaaaaaaaTCAATCTTAGATTGTCAGTT 171992 ||||| ||| ||| || ||||||||||| | || | || || |||||| || Sbjct 5742 CCCTTGTCACTGTTTGGCTCAATTTTATGT-TGCCAATGGTGAA--CTATCTTGTCAATT 5686 Query 171993 ATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTGGATTTTATTCATT 172052 ||||||| |||| || ||| | ||||| || ||||||| ||| || | | |||||| | Sbjct 5685 ATATCAACGATCTGCAGATATGGGATTAGGAGTACCTTTTAACATAGCAAGTTATTCTCT 5626 Query 172053 TTTAATACTTGTGTTAAGTAAATG-GTGCAATTTAACTCCAGGAAAGTTTATTCATACTT 172111 |||| || |||| | ||| | |||| | | || || | || |||||||| | Sbjct 5625 CTTAACGATTATGTT-GGCCCATGTGACCAATCTCAAACCTGGTGAATTCATTCATACCT 5567 Query 172112 TTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAAGGTTCAATTAAAAAGAA 172171 | || |||| ||||| || ||||| |||| | ||| | | |||||||| ||| Sbjct 5566 TAGGTGATGCACACGTATACAACAATCACATTGATGCCTTAGAAGAACAATTAAAGAGAG 5507 Query 172172 AACCATATACTTTTCCAAATGTTAAATT 172199 | ||| | | || || | | | ||||| Sbjct 5506 AGCCACGTCCATTCCCCACTATGAAATT 5479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627877802534400