Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq66674 145 7e-30 seq58440 125 7e-24 seq42503 113 4e-20 seq20317 105 7e-18 seq62093 104 2e-17 >seq66674 Length=28361 Score = 145 bits (160), Expect = 7e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 137255 |||||||| || |||| |||||||||||||| ||||| |||||| | |||| || | Sbjct 27205 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCA 27264 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 ||||| | ||||||||||||| |||||| |||||||||||| ||||| ||||| || || Sbjct 27265 -TCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTT 27323 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| |||||| ||| | | || | || || | ||| || ||||||| ||| | Sbjct 27324 GTCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGAT 27383 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || || || | |||||| ||||| || |||||| Sbjct 27384 TGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATA 27420 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 137200 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTC 137258 ||||||||||| | || || |||||||| ||||| || || | || | || | || Sbjct 27436 AAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGTCCA-TC 27494 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 || | ||||||||||||| |||||| |||||||||||| ||||| || ||||||||||| Sbjct 27495 CTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTC 27554 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 |||||| || | | ||| | || || | | ||| ||||||| ||| | || Sbjct 27555 TTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGATTGT 27614 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || | |||||| ||||| || ||||| Sbjct 27615 TTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 137200 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 137259 ||||||||||||| |||||||| ||||| ||||| ||||| | || || ||| Sbjct 27664 AAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAAAGCGTTCTTCCATCT 27723 Query 137260 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 137319 || | ||||||||||||| |||| | |||||| ||||| || || || ||||| ||||| Sbjct 27724 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCT 27783 Query 137320 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTC 137379 |||||| ||| | | ||| | || || | | ||| ||||||| ||| | || Sbjct 27784 TGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATTGTT 27843 Query 137380 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || | ||||| || || |||||||| Sbjct 27844 TTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||| |||||||||| || ||||| ||||| || || ||||| Sbjct 27877 CCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 27936 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | ||||||||||||| |||| | |||||| ||||| || || Sbjct 27937 AGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27996 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || || || ||| | | ||| | ||||||| | ||| ||| Sbjct 27997 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACT 28056 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || || ||||| || || || || || |||||||| Sbjct 28057 TCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||| | | || | |||| || || || ||||| ||||| ||||| Sbjct 28105 CCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAA 28164 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || || || | ||||||||||||| |||||| |||||| || || || || Sbjct 28165 AGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGA 28224 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || |||||| || | | ||| | ||||||| | ||| ||| Sbjct 28225 ATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCACT 28284 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || || || |||| ||||| || || || ||||| Sbjct 28285 TCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 >seq58440 Length=15377 Score = 125 bits (138), Expect = 7e-24 Identities = 339/509 (67%), Gaps = 15/509 (3%) Strand=Plus/Minus Query 151312 TTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCC 151371 |||||| || | || ||||| ||||||||| | ||| ||||| ||||||||| ||| Sbjct 5295 TTCGTCAGGAGAGCTATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCC 5236 Query 151372 GCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCC 151431 | || ||||||| ||| || ||||||| |||||||||||||||||| || || || Sbjct 5235 CAAGTTCTTTTGATTAGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCC 5176 Query 151432 GGTTTCGGCTTGAATTTCTATAAT-GTTTCGCATTAATGTAACCGCGGGCATTTGCTCGC 151490 ||||| ||| ||| || || | || || | | || || || | ||| | Sbjct 5175 AGTTTCAATTTGCGATTCAATGATGGCCTCCCA-CACTTTATGAGCAGGTACCTGCCGCC 5117 Query 151491 GAAACTGGCCTTTATCCTCATAATGTTTGTACCAGTAT-TCAAAGTCATCACCATACGTA 151549 || | | || |||||||| || | | ||| | ||||| || ||||| | | Sbjct 5116 TGAATTTGTTTTCATCCTCAT-ATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACA 5058 Query 151550 TCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACG 151609 || | | | ||||| || | ||||||||| | ||| ||||| | ||||| || Sbjct 5057 TCATCTAACCCTGGACATTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACT 4998 Query 151610 CGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCAC--GCGCTTTGGTGT 151667 |||||||| |||| ||| |||| ||| | || | | ||||| | || ||||| | Sbjct 4997 CGTTTCATGAATAAATCAGGAATCCAAAGAGCATAGAATAAATCCCTTGCCCTTTG--CT 4940 Query 151668 CTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTT 151727 |||| || | ||| ||| | | || || || | || || |||||| |||| Sbjct 4939 CTTCAGCCCCCGTATTTTTACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTT 4880 Query 151728 CAACGTACACTGC--TTGGGC---GCCTTTTCGCTTGCCACCTTGATCCACGTGACGCAC 151782 | | || | ||| || || ||||||| || |||||||| || || | | | Sbjct 4879 CTAAATAAATTGCAAATGCGCCAGGCCTTTT--GTTACCACCTTGGTCAACATATTTCGC 4822 Query 151783 CATATTATTAAAAACTCGCAGCATTGGTA 151811 | |||||||||||||||| ||||| |||| Sbjct 4821 CGTATTATTAAAAACTCGAAGCATGGGTA 4793 >seq42503 Length=950 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || | ||| |||||||||| || ||||| ||||| || || ||||| Sbjct 640 CCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 699 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | ||||||||||||| |||| | |||||| ||||| || || Sbjct 700 AGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 759 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || || || ||| | | ||| | ||||||| | ||| ||| Sbjct 760 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACT 819 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || || ||||| || || || || || |||||||| Sbjct 820 TCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || | | ||||| |||| || || || ||||| ||||| ||||| Sbjct 184 CCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAA 243 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || || || | ||||||||||||| |||||| |||||| || || || || Sbjct 244 AGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGA 303 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || |||||| || | | || | || || | | ||| ||| Sbjct 304 ATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGACT 363 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || || || || || || || || || |||||||| Sbjct 364 TCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 410 >seq20317 Length=5186 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| |||||||||| || ||||| ||||| || || ||||| | || || || Sbjct 3 CAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATC 62 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | ||||||||||||| |||| | |||||| ||||| || || || ||||| || || Sbjct 63 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATC 122 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 || || ||| | | ||| | ||||||| | ||| ||||||| ||| | || Sbjct 123 TTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGT 182 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || || || || || |||||||| Sbjct 183 TTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || | || ||||| || | || ||||| ||||| |||||||| ||| | Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 732 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | || | || || | ||| || |||||| |||||| |||||||||||| || || Sbjct 733 AATGTACGTCCA-TCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 791 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || || || || | | ||| | |||||||| | ||| || Sbjct 792 GATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCAC 851 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || | || || || || | ||||| || || |||||||| Sbjct 852 TTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 >seq62093 Length=56387 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 137222 CTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGA 137281 |||| || ||||| ||||| || || || |||||||| || || |||||| ||| Sbjct 3528 CTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAGA 3587 Query 137282 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTT 137341 | |||||||||||||| ||||| || ||||| || || || || || | | || Sbjct 3588 TGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACATTTT 3647 Query 137342 CCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGA 137401 | | || |||| ||||| || |||| || | |||||||| ||||| ||||| |||| Sbjct 3648 CGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACGA 3707 Query 137402 ATATTTGCAT 137411 | |||||||| Sbjct 3708 AGATTTGCAT 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488036127978000