Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq9530 123 4e-23 seq20317 95.1 2e-14 seq42503 93.3 8e-14 seq66674 91.5 3e-13 seq8496 86.0 1e-11 >seq9530 Length=29750 Score = 123 bits (136), Expect = 4e-23 Identities = 293/436 (67%), Gaps = 10/436 (2%) Strand=Plus/Plus Query 182854 ATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGTT 182913 |||||| ||||||| || || ||||||||||| || || ||| | | || |||||||| Sbjct 22054 ATTGTACGAAGAGAGCTGTCAGATAATTTTTGCTATTACAATGAGAACTATGATAGTGTG 22113 Query 182914 CAGTCTACTCACGCA---TGGGCT-AGAAGAACATTAGAAGATCACGTTAATGATCCTAG 182969 || | | |||| |||||| |||||| | || || || || || || Sbjct 22114 AAGGGTGC---CGCAGATTGGGCTCAGAAGACTCTCAGT-GAGCATAAAAAAGACAAAAG 22169 Query 182970 AAAGTATATCTATTCTATTAAACAACTC-GAAAAGGCAGAAACACATGACCCTCTATGGA 183028 | | || || || | | ||| | |||||||| ||||||||||| ||||||| Sbjct 22170 GACCCACATTTACTCAAG-ATCCAAGTTAGAAAAGGCGAAAACACATGACGACCTATGGA 22228 Query 183029 ATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACT 183088 ||||| |||| | || | | | |||||||| | ||| | | | ||||||| | Sbjct 22229 ATGCAGCACAGAACCAACTTGTCACTGAAGGAAAGTTACATGGGTACATGAGAATGTATT 22288 Query 183089 GGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCT 183148 |||||||||||||| | || ||||| || ||| || | || || | | | | | Sbjct 22289 GGGCTAAAAAGATATTAGAGTGGACGGAAAGTCCCGATGTAGCGCTGGCTGACGCTCTAT 22348 Query 183149 ATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGT 183208 || | || || | || | | | || || | ||| |||| |||| ||||| || |||| Sbjct 22349 ATCTTAATGATCACTATGCATTGGATGGAAATGATGCTAATGGATTTGTAGGGTGCATGT 22408 Query 183209 GGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAA 183268 |||| || || ||| | || ||| || ||| |||||| | |||||||| || || Sbjct 22409 GGTCGATATGTGGAATCCATGATCAAGGATGGCGTGAAAGATCCATATTTGGTAAAATTC 22468 Query 183269 GATATATGAATTATGA 183284 |||||||||| ||||| Sbjct 22469 GATATATGAACTATGA 22484 >seq20317 Length=5186 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || ||||||||||| || |||||||| | ||||| || Sbjct 16 AGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATCTTCCAATTGTTTA 75 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| | ||||||| |||| | || ||||||||||||| ||||| ||| Sbjct 76 CCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCT 135 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 136 TTAACATTTTCAATTGT 152 >seq42503 Length=950 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/128 (75%), Gaps = 11/128 (9%) Strand=Plus/Plus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAAAG 81701 |||||||| ||||| ||||| || |||||||| | |||||||| |||| Sbjct 448 TCCTTCTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAAT 507 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 || | |||||| ||| ||||| | ||| |||||||||||||||| || || || | |||| Sbjct 508 ATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTT 567 Query 81762 TCAATCGT 81769 ||||| || Sbjct 568 TCAATGGT 575 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || ||||||||||| || || ||||| | ||||| || Sbjct 667 AGAGTGGATTCCTTTTGAATATTATAATCTGAAAGNGTTCTTCCATCTTCCAATTGTTTA 726 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| | ||||||| |||| | || ||||||||||||| ||||| ||| Sbjct 727 CCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCT 786 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 787 TTAACATTTTCAATTGT 803 >seq66674 Length=28361 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || ||||||||||| || || ||||| | ||||| || Sbjct 27904 AGAGTGGATTCCTTTTGAATATTATAATCTGAAAGGGTTCTTCCATCTTCCAATTGTTTA 27963 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| | ||||||| |||| | || ||||||||||||| ||||| ||| Sbjct 27964 CCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCT 28023 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 28024 TTAACATTTTCAATTGT 28040 >seq8496 Length=11530 Score = 86.0 bits (94), Expect = 1e-11 Identities = 197/295 (67%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 |||||||||||| || || || | || ||| || || |||||||||| || | Sbjct 2170 TGGTGGTACTATGCTTCAAAGGGTTTCGAGCTCTTTGACTCATTGTTTTTCATTCTACGT 2111 Query 58445 AAAAAGTTTAATC--ATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTT 58502 ||||| |||| | | | ||||| ||||||||||||||| |||||||||| Sbjct 2110 AAAAAAG--AATCGCAGCTCACATTTCTTCACGTATATCATCATAGTACTATGTTTTGCC 2053 Query 58503 TAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAGGCATTTTTCGGCGCTCAGTTGA 58562 | | ||| | ||| | |||| |||| ||||| | ||||| | || || ||| | Sbjct 2052 TCTGGTGGATTGGTGTGAAATATGTTGCGGGAGGCTCGTCATTTCTGGGTGCGATGTTTA 1993 Query 58563 ATTCTTTTATCCATGTTATTATGTATAGTTATTATGGTATGGCGGCGTGTGGACATATGT 58622 |||| ||| | ||| || | |||||| |||||| | | | |||||||||| | Sbjct 1992 ATTCATTTGTGCATATTTTGATGTATTCCTATTATTTTTTAACCGCGTGTGGACCCAAAG 1933 Query 58623 TTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATAATGCAATTGGTACAATT 58677 || || || ||||||||| || | ||| ||| ||| |||| ||||| Sbjct 1932 TTCGGGCTTACTTGTGGTGGAAGAAATATTTGACTTCAATACAAATGGTTCAATT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902472047594400