Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq17694 89.7 7e-13 seq8061 87.8 2e-12 >seq17694 Length=1740 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | |||||| |||||||||||||| Sbjct 1067 TCCTCGATAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGGCCGGGGTTCGATTC 1126 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 1127 CCCGTCGGGGAG 1138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||| |||||||||||||| Sbjct 1067 TCCTCGATAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGGCCGGGGTTCGATTC 1126 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 1127 CCCGTCGGGGAGG 1139 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| ||||||||||| |||||| | |||| |||||||| | ||||||| Sbjct 1138 CTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1079 Query 139413 TACTAACGAGGATTT 139427 ||||| ||||||||| Sbjct 1078 TACTATCGAGGATTT 1064 >seq8061 Length=1481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||| |||| ||||| | |||||| |||||||||||||| Sbjct 1231 TCCTCGATAGTATAGTGGTGAGTAYCCCCGCCTGTCACGCGGGAGGCCGGGGTTCGATTC 1290 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 1291 CCCGTCGGGGAG 1302 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| |||| |||| ||||| | |||||| |||||||||||||| Sbjct 1231 TCCTCGATAGTATAGTGGTGAGTAYCCCCGCCTGTCACGCGGGAGGCCGGGGTTCGATTC 1290 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 1291 CCCGTCGGGGAGG 1303 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| ||||||||||| |||||| | |||| ||||| || | ||||||| Sbjct 1302 CTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGRTACTCACCACTA 1243 Query 139413 TACTAACGAGGATTT 139427 ||||| ||||||||| Sbjct 1242 TACTATCGAGGATTT 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652166127027600