Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq62093 86.0 6e-12 seq66674 82.4 7e-11 seq42503 82.4 7e-11 >seq62093 Length=56387 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || |||||||||||||| || | ||||| || ||||| || ||||| || |||||||| Sbjct 3563 TCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTA 3622 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | || || | || || || || | ||| | | Sbjct 3623 TCCTGGATCTTAGTCTTCACATTTTCGATGGTATCTGAAGGTTCGACCTCAAGGGTAATG 3682 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| |||||| ||||| || ||||| Sbjct 3683 GTCTTGCCCGTCAAAGTTTTGACGAAGATTTGCAT 3717 >seq66674 Length=28361 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || ||||| || || || |||||| | ||| | | | || || | Sbjct 27214 AAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCA-TCTTCCAA 27272 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || | || ||||| || ||||| ||||| |||||||| ||| Sbjct 27273 TTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTGTCT-TGAA 27331 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | ||||| || || | |||||| || || | |||| ||||| | Sbjct 27332 TTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGATTGTTTTAC 27391 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || ||||| |||||||||||||| Sbjct 27392 CAGTGAGTGTTTTAACGAAAATCTGCAT 27419 >seq42503 Length=950 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| |||||||||||| | || || || | Sbjct 433 AAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCTAAT 492 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || | | ||||| || ||||| || |||||||| || ||| Sbjct 493 TGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT-TGAAT 551 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || |||| | |||| ||||| | || || || || | |||| |||||| || Sbjct 552 TTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACTTCAAGTGTGATGGTTTTTCC 611 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 612 AGTGAGGGTTTTAACGAAAATCTGCAT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482918253864600