Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq58440 300 4e-76 >seq58440 Length=15377 Score = 300 bits (332), Expect = 4e-76 Identities = 425/597 (71%), Gaps = 3/597 (1%) Strand=Plus/Plus Query 110546 TGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTC 110605 ||| || |||||||| ||||||||| |||| ||| ||||||| ||||||| ||| | | Sbjct 4650 TGACTCCATTGAAGGCATTTATGATACTCTGAAACAAACTGCAATTATTTCAAAATCCGC 4709 Query 110606 TGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGC 110665 |||||| || |||||| | ||||| |||||| ||||||| | |||| || | Sbjct 4710 TGGAGGGATCGGTATTAATATTCATTGTATTCGAGCAAAAGGTTCTTATATTGCGGGGAC 4769 Query 110666 GAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATA 110725 || || || | ||| |||| || ||| | |||| || || | || || ||||| Sbjct 4770 CAATGGATACTCTAATGGGATTGTACCCATGCTTCGAGTTTTTAATAATACGGCGAAATA 4829 Query 110726 TGTGAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAACCTTGGCA 110782 ||| | ||||||||||| | || |||| ||||||| || ||| | ||||||||||| Sbjct 4830 TGTTGACCAAGGTGGTAACAAAAGGCCTGGCGCATTTGCAATTTATTTAGAACCTTGGCA 4889 Query 110783 TTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGC 110842 | | ||| | ||||| || ||||||| ||||||||| || |||||| ||||| || Sbjct 4890 TGCGGATGTTTTTGATTTTCTAGAACTACGTAAAAATACGGGGGCTGAAGAGCAAAGGGC 4949 Query 110843 ACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 | | |||||||| ||||| | |||||| | ||||||||||||||||| || |||| | Sbjct 4950 AAGGGATTTATTCTATGCTCTTTGGATTCCTGATTTATTCATGAAACGAGTGGAAGAGGA 5009 Query 110903 TGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAA 110962 ||| || ||| ||||||||||||||| | ||| || || |||||| | || | Sbjct 5010 TGGTATTTGGAGCCTTATGTGTCCTCATGAATGTCCAGGGTTAGATGATGTTTGGGGTGA 5069 Query 110963 AGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCC 111022 ||| ||||| | || || |||||||| | ||| ||| || | || | || Sbjct 5070 AGATTTTGAGAAACTATATCTTAAATATGAGGATGAAAACAAATTCAGGCGGCAGGTACC 5129 Query 111023 AGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATAT 111082 ||||| || | ||| ||| ||||||| ||| |||||||||| ||||| || || Sbjct 5130 TGCTCATAAAGTGTGGGAGGCCATCATTGAATCGCAAATTGAAACTGGGACTCCCTACAT 5189 Query 111083 TTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 || || || || | ||||| ||||||||||||| ||| || ||||| || || Sbjct 5190 GTTATACAAGGACTCTTGCAATCGGAAATCTAATCAAAAGAACTTGGGAACTATAAA 5246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185548189766565