Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq66674 134 9e-27 seq42503 122 6e-23 seq20317 111 1e-19 seq12343 87.8 1e-12 >seq66674 Length=28361 Score = 134 bits (148), Expect = 9e-27 Identities = 176/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||||||||| | ||| || ||||| ||||| || ||||| ||| Sbjct 27637 AAAATCTGCATTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATG 27696 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || ||||| || || || | | | || ||||||||||| || ||||| || ||||| || Sbjct 27697 TTATAATCTGAAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGT 27756 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | |||||| ||||| |||||| | || ||||| || | || || Sbjct 27757 TGATCTGGGGGAATACCTTCCTTGTCTTGAATTTT-AGCTTTAACATTTTCAATAGTATC 27815 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||| || |||| ||||| |||||||| || | ||||| |||||||| ||||| Sbjct 27816 AGAAGCTTCGACTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | ||| || ||||| | ||| ||||||||| ||||| || || || Sbjct 27420 ACCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGA 27479 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| | || || |||||||| || ||||| |||||||| ||||||||| | || Sbjct 27480 TAAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGG 27539 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | | ||||| || | || || | ||| | Sbjct 27540 AATACCTTCTTTGTCTTGAATTTT-AGCCTTAACATTTTCTATAGTATCAGAAGCTTCAA 27598 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| |||||||| || | ||||| || || |||||||| Sbjct 27599 CTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | || || ||||| |||||| || ||||| || || ||||| || Sbjct 27877 CCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 27936 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || ||||||||||| || ||||| || ||||| || |||||| | || Sbjct 27937 AGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27996 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || || || | || ||||| || | ||||| | ||| || Sbjct 27997 ATACCTTCCTTATCTTGGATCTT-GGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGAC 28055 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| |||||||| ||||| || || |||||||| ||||| Sbjct 28056 TTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || ||||| || || || |||||||| ||||| |||||||| | |||||| | Sbjct 27205 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCA 27264 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || ||||||||||| || ||||| |||||||| ||||||||| | || | || || ||| Sbjct 27265 TCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTG 27324 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || |||||| | || ||||| || | ||| || | || || |||| ||||| Sbjct 27325 TCTTGAATTTT-GGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGAT 27383 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||||||| || | ||||| || || ||||||||| Sbjct 27384 TGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATA 27420 >seq42503 Length=950 Score = 122 bits (134), Expect = 6e-23 Identities = 173/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||||||| | || || ||||| |||||| || ||||| || Sbjct 628 AAAATCTGCATTCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATA 687 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || ||||| || || || | | | || ||||||||||| || ||||| || ||||| || Sbjct 688 TTATAATCTGAAAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGT 747 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | |||||| || || || || | || ||||| || | ||||| Sbjct 748 TGATCTGGGGGAATACCTTCCTTATCTTGGATCTT-GGCTTTAACATTTTCAATTGTGTC 806 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||| || |||| ||||| |||||||| ||||| || || |||||||| ||||| Sbjct 807 TGAAGCTTCGACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| | | ||||| || || || ||| || || || ||||||||||| Sbjct 412 CCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAA 471 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || || ||||| || || ||||| ||||| | ||||||||| | || Sbjct 472 AGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGA 531 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| | | |||| || | |||||| | ||| || Sbjct 532 ATTCCTTCCTTATCTTGAATTTT-AGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAAC 590 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 591 TTCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCAT 638 >seq20317 Length=5186 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| |||||| || ||||| || || ||||| || || || | | | || Sbjct 4 AATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATCT 63 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 ||||||||||| || ||||| || ||||| || |||||| | || | |||||| || || Sbjct 64 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCT 123 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || | || ||||| || | ||||| | ||| || |||| ||||| || Sbjct 124 TGGATCTT-GGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGT 182 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| ||||| || || |||||||| ||||| Sbjct 183 TTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| | | |||||||| || || ||| ||||| ||||| || || || Sbjct 217 CCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGAT 276 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| | || || |||||||| || ||||||||||| | |||||||||| | || Sbjct 277 AAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGA 336 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||||| | | |||| || | ||||| | |||||| Sbjct 337 ATTCCTTCCTTATCTTGGATTTT-AGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCAC 395 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 396 TTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCAT 443 Score = 104 bits (114), Expect = 2e-17 Identities = 169/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||||||| | ||| || ||||| || ||| || ||||| ||| Sbjct 433 AAAATCTGCATTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATG 492 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || | || ||| | || ||||| || ||||| ||||| |||| | |||| Sbjct 493 TTGTAGTCTGACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGC 552 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 |||||| | || | ||||| || || ||| || || ||| | ||| ||| || Sbjct 553 TGATCTGGGGGAATTCCTTCCTTATCTTGAATCTTGGCCTT-AACGTTTTCAATGGTATC 611 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||| || || | ||| || || || || || || ||||| |||||||||||||| Sbjct 612 TGAGGGTTCAACCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 671 >seq12343 Length=6788 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 13/234 (6%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||| | || | |||||||| |||||| ||||||| |||||||| || Sbjct 2154 CACCACCTCGGAGACAGAGAACCAAATGAAGAGTGGATTCTTTTTTAATGTTGTAGTCCA 2213 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT---T 33637 | || || || | || || ||||||||||| |||| |||||||| ||||||||| Sbjct 2214 AAAGAGTACGACCATCCTCTAATTGTTTTCCAACAAAGATCAAACGTTGCTGATCTAGAG 2273 Query 33638 GCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCT-TGAT 33696 | || | || || || || ||||| ||||| ||||| | ||| | | Sbjct 2274 GAGGTATTCCCTCCTTATCCTTGATTTT-TGTTTTAACAT--------TTTCGATAGGCC 2324 Query 33697 TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || |||| || || |||||||| | | || ||||| || ||||||||| Sbjct 2325 TCAACCTCAAGGGTAATAGTTTTACCCGCAAGGGTCTTTACGAAAATCTGCATA 2378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328370834356800