Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq42503 123 6e-23 seq20317 114 3e-20 seq66674 109 1e-18 seq62093 87.8 4e-12 >seq42503 Length=950 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| |||||||| ||||| | ||||| ||| || ||||| | ||| Sbjct 623 AAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTCAGACACCATTGAAAAT 564 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||||||| || || |||||| | || || Sbjct 563 GTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGATTGATATTT 504 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| || ||||||||||| ||| | |||||||||| ||||||| ||||| Sbjct 503 GCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAATATCCAGAAGGAGTCA 444 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 || |||||| | ||| | ||| Sbjct 443 ACCCTTCACTTGGTTCTCAGA 423 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| |||||| | ||||| ||| ||| |||||| | ||| || ||||| Sbjct 842 ACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCAGACACAATTGAAAATGTTAAAGCC 783 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| ||||| || ||||| ||| || || ||| | | ||||| || || || Sbjct 782 AA-GATCCAAGATAAGGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTTGCTGGTAA 724 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||||||||| || | | ||||| || | || || || || |||||||| Sbjct 723 ACAATTGGAAGATGGAAGAACNCTTTCAGATTATAATATTCAAAAGGAATCCACTCTTCA 664 Query 206373 CCTTGTTTTGAGA 206385 | || |||||| Sbjct 663 TTTAGTATTGAGA 651 >seq20317 Length=5186 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || ||||| || || || | || || ||| || || Sbjct 668 CAGATCTTTGTCAAAACTTTGACTGGAAAGACCATTACGCTCGAGGTTGAACCCTCAGAT 609 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || ||||||||| || || || Sbjct 608 ACCATTGAAAACGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCAGCAG 549 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || ||||||||||||||||||||| | |||||| | || |||||| || Sbjct 548 AGACTGATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACTTTGTCAGACTACAACATC 489 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || || || || ||||| | || || ||| Sbjct 488 CAAAAGGAATCCACCCTTCATTTAGTATTAAGA 456 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| |||||| | ||||| ||| ||| |||||| | ||| || ||||| Sbjct 191 ACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCAGACACAATTGAAAATGTTAAAGCC 132 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| ||||| || ||||| ||| || || ||| | | ||||| || || || Sbjct 131 AA-GATCCAAGATAAGGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTTGCTGGTAA 73 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||||||||| ||| | | ||||| || | || || || || |||||||| Sbjct 72 ACAATTGGAAGATGGAAGAACTCTTTCAGATTATAATATTCAAAAGGAATCCACTCTTCA 13 Query 206373 CCTTGTTTTGAG 206384 | || ||||| Sbjct 12 TTTAGTATTGAG 1 >seq66674 Length=28361 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| |||||| | ||||| || ||||| || | || Sbjct 27404 AAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCTGATACCATTGAGAAT 27345 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| || || || ||| || || ||| | | ||||| Sbjct 27344 GTTAAAGCCAAA-ATTCAAGACAAGGAGGGCATTCCTCCAGATCAGCAACGTTTGATCTT 27286 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || |||||||||||| | ||||| ||||||| ||| | || ||||| || Sbjct 27285 TGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTATAACATTCAAAAAGAATC 27226 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| |||||| | |||||| | ||||| Sbjct 27225 TACCCTTCACTTGGTTTTGCGCCTTCG 27199 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| || || || ||||| |||||| | ||||| ||| |||||| Sbjct 27872 CAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTCTGAT 27813 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| ||| |||||||| || ||||| ||| || || || Sbjct 27812 ACTATTGAAAATGTTAAAGCTAAA-ATTCAAGACAAGGAAGGTATTCCCCCAGATCAACA 27754 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | ||||| || || || || |||||||||||||| || | | ||||| ||| | Sbjct 27753 ACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTTTCAGATTATAACAT 27694 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || || ||||||||||| | ||||| ||| Sbjct 27693 TCAAAAGGAATCTACTCTTCATTTAGTTTTAAGA 27660 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| |||||| | ||||| ||| ||| |||||| | ||| || ||||| Sbjct 28079 ACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCAGACACAATTGAAAATGTTAAAGCC 28020 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| ||||| || ||||| ||| || || ||| | | ||||| || || || Sbjct 28019 AA-GATCCAAGATAAGGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTTGCTGGTAA 27961 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||||||||| || | | ||||| || | || || || || |||||||| Sbjct 27960 ACAATTGGAAGATGGAAGAACCCTTTCAGATTATAATATTCAAAAGGAATCCACTCTTCA 27901 Query 206373 CCTTGTTTTGAGA 206385 | || |||||| Sbjct 27900 TTTAGTATTGAGA 27888 >seq62093 Length=56387 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || || || || || || | || || ||| ||| || || ||||| Sbjct 3703 CAAAACTTTGACGGGCAAGACCATTACCCTTGAGGTCGAACCTTCAGATACCATCGAAAA 3644 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || ||||||||| || || ||| | || ||||| Sbjct 3643 TGTGAAGACTAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAGCAACGTCTCATCTT 3584 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 || || |||||| | |||||||||||||||||| | ||||| ||| | ||||||| Sbjct 3583 TGCTGGCAAGCAGCTCGAAGATGGAAGGACTTTGTCTGATTATAACATTCAGAAAG 3528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180561508999965