Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq66674 125 7e-24 seq20317 100 3e-16 seq17180 89.7 5e-13 >seq66674 Length=28361 Score = 125 bits (138), Expect = 7e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | |||||||||||| || | | | || |||||||||||||| || ||| | || Sbjct 27198 ACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGT 27257 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | |||||||| | | |||| | ||| || ||||||||||| ||||| Sbjct 27258 GCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCC 27317 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || |||||| ||| | | || | ||||| | ||||| ||||| | Sbjct 27318 CTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAG 27377 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||||||||| || ||||| | |||||||||||| Sbjct 27378 AGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| ||||| | | ||||||||||||||||| ||||| | ||||| ||| Sbjct 27436 AAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCC 27495 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | |||||||| | | |||| | ||| || ||||||||||| || |||||||| || Sbjct 27496 TCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCT 27555 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 |||||| || | | ||| | |||||| | | || ||||| | || | ||| Sbjct 27556 TGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGATTGTT 27615 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || ||||| | |||||||||||| Sbjct 27616 TTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| ||||| | | || || ||||||||||| || || | || | |||| Sbjct 27664 AAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAAAGCGTTCTTCCATCT 27723 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | |||||||| | | |||||| ||| ||||||||||| || || ||||| || || Sbjct 27724 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCT 27783 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 |||||| ||| | | ||| | |||||| | | || ||||| | || | ||| Sbjct 27784 TGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATTGTT 27843 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || ||||| | || || ||||| Sbjct 27844 TTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 >seq20317 Length=5186 Score = 100 bits (110), Expect = 3e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 235 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCTTCT 294 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||| || | | | || | | ||| ||||||||||| || ||||| ||||| Sbjct 295 AATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 354 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | ||| || | | |||||||| | || | ||||| Sbjct 355 ATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACTTCAAGAGTGATTGTTTTT 414 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | ||||||||||| Sbjct 415 CCAGTGAGAGTTTTAACAAAAATCTGCAT 443 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 || || ||||| | | | || || ||||| ||||||||||| || ||||| |||| Sbjct 460 AATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGACAAAGTACGTCCATCT 519 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||| || || | | |||| || | ||| |||||||| || || ||||| ||||| Sbjct 520 TCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGGGAATTCCTTCCTTATCT 579 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||| || || | | ||| | ||||| | || || || |||| ||| | || Sbjct 580 TGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAACCTCGAGCGTAATGGTC 639 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||||| |||||| | || |||||||| Sbjct 640 TTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 671 >seq17180 Length=12851 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 ||||||||||||||||||| | |||||| ||| || | || || || | | ||| Sbjct 4121 CTTTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGA 4062 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC-TGT 132052 | | ||| || ||||||||||| || || || ||||| ||||| || | ||| | | Sbjct 4061 TCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTATCCTGGATTTTG-GTCTTAACATTT 4003 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | |||||| | | ||| || || | || | |||||||| || || || || | | Sbjct 4002 TCGATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCACG 3943 Query 132113 AAAATCTGCAT 132123 ||||||||||| Sbjct 3942 AAAATCTGCAT 3932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476115732869400