Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq42503 132 4e-26 seq66674 127 2e-24 seq20317 118 9e-22 >seq42503 Length=950 Score = 132 bits (146), Expect = 4e-26 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || |||||||| ||| | ||||| | ||||||||||| Sbjct 866 ATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCA 807 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| || || ||||| || ||||| || || ||||| Sbjct 806 GACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 747 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | | || |||||| | ||||||| |||| | |||| |||| | Sbjct 746 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACNCTTTCAG--ATTATA 689 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||| |||||||| |||||||||| || |||||||||||||||| Sbjct 688 ATATTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGAGGAA 638 Score = 116 bits (128), Expect = 3e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || ||||| || ||| | ||||| | ||||||||||| Sbjct 410 ATGCAAATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTCT 351 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || || |||||| ||||| || ||||| || || || || Sbjct 350 GATACTATTGAGAATGTTAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAA 291 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | | || |||||| | || |||| |||| | |||| |||| | Sbjct 290 CAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAG--ATTATA 233 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | || ||||| || |||||| |||| ||||| | |||||||||||||| | Sbjct 232 ACATCCAAAAGGAGTCCACCCTTCACTTAGTCCTCAGATTGAGAGGAGGRA 182 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | || |||||| | ||||| | ||||| |||||| Sbjct 638 ATGCAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTCA 579 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || |||||| ||||| || || || || || |||||| Sbjct 578 GACACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 519 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | ||||| ||| | ||||||| |||| | | |||||||||| Sbjct 518 CAAAGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAAT 459 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || || || ||| |||| || || | |||||||||||||||| Sbjct 458 ATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCAGATTGAGAGGAGGAA 410 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || ||||| || ||| | ||||| | ||||||||||| Sbjct 182 ATGCARATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTCT 123 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || || ||||| ||||| || || || || || |||||| Sbjct 122 GATACTATTGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 63 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 25331 || ||| | |||| | || |||||| | ||||||| Sbjct 62 CAGAGATTGATTTTTGCTGGTAAACAATTAGAAGATG 26 >seq66674 Length=28361 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | ||||| | ||||||||||| Sbjct 27875 ATGCAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTCT 27816 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| |||||| || || || ||||| || || ||||| Sbjct 27815 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAA 27756 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | | || |||||| | ||||||| |||| | |||| |||| | Sbjct 27755 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTTTCAG--ATTATA 27698 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | |||||||| ||||| || |||||||||| |||||||||||||| |||| Sbjct 27697 ACATTCAAAAGGAATCTACTCTTCATTTAGTTTTAAGATTGAGAGGTGGAA 27647 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || |||||||| ||| | ||||| | ||||||||||| Sbjct 28103 ATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCA 28044 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| || || ||||| || ||||| || || ||||| Sbjct 28043 GACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 27984 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | | || |||||| | ||||||| |||| | |||| |||| | Sbjct 27983 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCCTTTCAG--ATTATA 27926 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||| |||||||| |||||||||| || ||||||||||| |||| Sbjct 27925 ATATTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGTGGAA 27875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || |||||| | || || ||| | ||||| | ||||| ||||| Sbjct 27647 ATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAAGCTTCT 27588 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || |||||| || ||||| ||||| || || |||||| Sbjct 27587 GATACTATAGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAG 27528 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | || |||||| | || |||| | | | | || || || Sbjct 27527 CAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGACGTACTTTATCAGACTATAAC 27468 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| ||||| | |||||||| |||||| | ||||| || Sbjct 27467 ATTCAAAAAGAGTCCACGTTGCATTTAGTTTTAAGACTTAGAGGTGG 27421 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || |||||| | || || ||| | ||||| | ||||| || || Sbjct 27419 ATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCT 27360 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || ||| |||||| || || ||||| || || || |||||| Sbjct 27359 GATACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAGGGCATTCCTCCAGATCAG 27300 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | || |||||| | ||||||| | | | | |||||| || Sbjct 27299 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTATAAC 27240 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||| ||| |||| || || || Sbjct 27239 ATTCAAAAAGAATCTACCCTTCACTTGGTTTT 27208 >seq20317 Length=5186 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || ||||| | || ||| |||| || ||| || Sbjct 671 ATGCAGATCTTTGTCAAAACTTTGACTGGAAAGACCATTACGCTCGAGGTTGAACCCTCA 612 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| ||||| || || || || || |||||| Sbjct 611 GATACCATTGAAAACGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCAG 552 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT--GTCAGCGATTACA 25352 || ||||| || | | || || || | ||||||| | | | ||||| | |||| Sbjct 551 CAGAGACTGATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACTTTGTCAG--ACTACA 494 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | || ||||| ||||||||| |||||||||| ||||||||||||||||||| Sbjct 493 ACATCCAAAAGGAATCCACCCTTCATTTAGTATTAAGATTGAGAGGAGGAA 443 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || |||||||| ||| | ||||| | ||||||||||| Sbjct 215 ATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCA 156 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| || || ||||| || ||||| || || ||||| Sbjct 155 GACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 96 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | || |||||| | ||||||| |||| | | ||||| ||| Sbjct 95 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCAGATTATAAT 36 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 |||||||| |||||||| |||||||||| || || Sbjct 35 ATTCAAAAGGAATCCACTCTTCATTTAGTATTGAG 1 Score = 104 bits (114), Expect = 2e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || |||||| | ||||| | ||||| ||||| Sbjct 443 ATGCAGATTTTTGTTAAAACTCTCACTGGAAAAACAATCACTCTTGAAGTGGAAGCTTCA 384 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || ||||| ||||| || || || || || |||||| Sbjct 383 GACACTATTGAAAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 324 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| | || |||||| | ||||||| | | | | || || || Sbjct 323 CAGAGATTGATTTTTGCTGGYAAACAATTAGAAGATGGACGTACTTTATCAGACTATAAC 264 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| || || ||| ||||||| || | |||||||||||||||| Sbjct 263 ATTCAAAAGGAGTCGACCCTTCATTTGGTCCTTAGATTGAGAGGAGGAA 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444631696552800