Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq20317 98.7 8e-16 seq66674 82.4 6e-11 >seq20317 Length=5186 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| ||||| |||||||| ||||||||||| | || |||||| Sbjct 672 AATGCAGATCTTTGTCAAAACTTTGACTGGAAAGACCATTACGCTCGAGGTTGAACCCTC 613 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || || || ||| || || ||||| | ||| ||||| Sbjct 612 AGATACCATTGAAAACGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCA 553 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || || || || | ||| || || || || |||||| ||| || || ||||| Sbjct 552 GCAGAGACTGATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACTTTGTCAGACTACAA 493 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| ||||| ||||| || || ||||||||||| || || |||||||| Sbjct 492 CATCCAAAAGGAATCCACCCTTCATTTAGTATTAAGATTGAGAGGAGGA 444 >seq66674 Length=28361 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||||||| | ||||| || || || || | ||| || ||| Sbjct 27419 ATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCT 27360 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| ||||| || ||| | || ||||| Sbjct 27359 GATACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAGGGCATTCCTCCAGATCAG 27300 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || |||||||| |||||| ||| | |||||| ||| Sbjct 27299 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTATAAC 27240 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || |||||||||||||| || || || || ||| Sbjct 27239 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTG 27207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401921809404320