Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq53058 98.7 1e-14 seq58391 93.3 6e-13 seq41671 91.5 2e-12 seq36367 91.5 2e-12 seq49399 86.0 9e-11 >seq53058 Length=6343 Score = 98.7 bits (108), Expect = 1e-14 Identities = 165/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966 || |||||||||||| | || ||||| || |||||| | ||| |||||| ||| Sbjct 4189 CTATATCTACAAGGTCTTGAAACAGGTCCA-CCCCGA--CACTGGTGTATCCTC---CAA 4242 Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 | ||||| |||||||| || || ||||| || || | || | || | | ||||| | Sbjct 4243 GGCCATGAGCATCATGAATTCTTTCGTCAATGATATCTTTGAGAGAATTGCCGCCGAGTC 4302 Query 725027 CGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGC 725086 | ||| || || | || ||||||| | ||| ||| | | | || ||||| ||||| Sbjct 4303 CTCTCGTCTTGCTCACTACAACAAGAGATCCACCATCACCTCCAGAGAAATCCAAACCGC 4362 Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || || | | ||| || |||||| |||||| ||||| || ||||||| Sbjct 4363 TGTCCGTCTCCTCCTCCCCGGAGAGTTGGCCAAGCACGCTGTCTCTGAAGGCACCA 4418 >seq58391 Length=5728 Score = 93.3 bits (102), Expect = 6e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||| ||||||||||| || || |||||||| | || | |||| | |||| Sbjct 5726 CAAGGCCATGAGCATCATGAACTCTTTCGTGAACGACATCTTTGAGAGAATCGCCGCCGA 5667 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 | || ||| || || | || ||||||| | ||| ||| | | | || ||||| || Sbjct 5666 GTCCTCTCGTCTCGCTCACTACAACAAGAGATCCACCATCACCTCCAGAGAAATCCAAAC 5607 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || || || || | | ||| || |||||| |||||| ||||| ||||| |||| Sbjct 5606 CGCTGTCCGTCTCCTCCTCCCCGGAGAGTTGGCCAAGCACGCTGTCTCTGAGGGTACCA 5548 >seq41671 Length=3059 Score = 91.5 bits (100), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| | ||||| || ||||| || | || |||||| || | | Sbjct 3014 ATCTACAAGGTCTTGAAGCAAGTCCACCCTGACACTGGTGT---ATCCTCAAA---GGCT 2961 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || || |||||||| |||| | |||| | ||||| | | Sbjct 2960 ATGAGCATCATGAACTCCTTCGTGAACGACATCTTCGAGAGAATCGCCGCCGAGTCTTCT 2901 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | | | || || || ||||| ||| Sbjct 2900 CGTCTCGCTCACTACAACAAGAGATCCACCATCACCTCCAGAGAAATTCAAACCGCTGTG 2841 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || ||| |||||| |||||| |||||| ||||| || || || Sbjct 2840 AGACTTCTCCTGCCCGGCGAGTTGGCCAAGCACGCGGTCTCTGAAGGAAC 2791 >seq36367 Length=6734 Score = 91.5 bits (100), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| | || ||||| || |||||| | ||| |||||| |||| || Sbjct 106 ATCTACAAGGTCTTGAAACAGGTCCA-CCCCGA--CACTGGTGTATCCTC---CAAGGCC 159 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || ||||| ||||| | || | || | | ||||| || | Sbjct 160 ATGAGCATCATGAATTCTTTCGTCAATGACATCTTTGAGAGAATTGCCGCCGAGTCCTCT 219 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| || | | | || ||||| || || || Sbjct 220 CGTCTCGCTCACTACAACAAGAGATCCACCATTACCTCCAGAGAAATCCAAACTGCTGTC 279 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | | ||| || |||||| |||||| ||||| || ||||||| Sbjct 280 CGTCTCCTCCTCCCCGGAGAGTTGGCCAAGCACGCTGTCTCTGAAGGCACCA 331 >seq49399 Length=2956 Score = 86.0 bits (94), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || || ||||| | ||||| || ||||| || | || |||||| || | | Sbjct 382 ATYTAYAAGGTCTTGAAGCAAGTCCACCCTGACACTGGTGT---ATCCTCAAA---GGCT 329 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || || |||||||| |||| | |||| | ||||| || | Sbjct 328 ATGAGCATCATGAACTCCTTCGTTAACGACATCTTCGAGAGAATCGCCGCCGAGTCCTCT 269 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | ||||||| | ||| ||| | | | || || || ||||| ||| Sbjct 268 CGTCTCGCTCATTACAACAAGAGATCCACCATCACCTCCAGAGAAATTCAAACCGCTGTG 209 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || ||| |||||| |||||| |||||| ||||| || || || Sbjct 208 AGACTTCTCCTGCCCGGCGAGTTGGCCAAGCACGCGGTCTCTGAAGGAAC 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7169789782892730