Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq20317 120 3e-22 seq66674 105 6e-18 seq62093 89.7 5e-13 seq17180 87.8 2e-12 >seq20317 Length=5186 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | ||||||| || || || | || ||||||||||||||||| |||| Sbjct 671 TTCCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGG 730 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || | || |||| ||||| || ||||| ||||| || ||||| || | | Sbjct 731 ACAATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGG 790 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | ||||| ||| |||||| ||| | | || | | |||||| | ||||| Sbjct 791 GGATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCA 850 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | ||||| ||||||||||| | |||||||||||| || ||||| Sbjct 851 CTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||||||||||||||| || || | || || || | || || Sbjct 235 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCTTCT 294 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | || || || ||||| ||||| | |||||| || | ||||| | ||||| || | Sbjct 295 AATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 354 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 || || ||| | | || | | ||||| | |||||| || | ||||| ||||| Sbjct 355 ATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACTTCAAGAGTGATTGTTTTT 414 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | |||||| ||||| |||||||||| Sbjct 415 CCAGTGAGAGTTTTAACAAAAATCTGCATTC 445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | || || || || ||||| | || |||||||| |||||||| || | Sbjct 443 TTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTG 502 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || | || |||| |||||| || ||||| |||| | |||||| || | | Sbjct 503 ACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGG 562 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| || ||||| ||| | || | | || || | ||| | Sbjct 563 GAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAA 622 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| | ||| || || || || ||||||||||| ||||| |||||||||| Sbjct 623 CCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCATTC 673 >seq66674 Length=28361 Score = 105 bits (116), Expect = 6e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || |||||||||||| | | ||| ||||| || | ||| || ||||||||||| || Sbjct 27186 TTAATTTCCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATA 27245 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 ||||| || || || | || |||| || ||||| ||||| ||||| || ||||| || Sbjct 27246 ATCGGATAAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATC 27305 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCG 35681 | ||||| || |||||||| | ||| ||| || || | | | | | || || | Sbjct 27306 TGGAGGAATGCCCTCCTTGT-CTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGG 27364 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | ||||| |||||||| || | ||||| || || |||||||| Sbjct 27365 GCTCAACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 || || || ||||| ||||| ||| ||||||||||| || || | || || || | Sbjct 27433 CTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGTCCA 27492 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || || | || ||||| ||||| ||||| || ||||| || | ||||| | || ||| Sbjct 27493 TCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTG 27552 Query 35642 TCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGAT 35700 | | ||| ||| | ||| | | || | | || || | ||| || || | ||||| Sbjct 27553 T-CTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGAT 27611 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||||||| || | ||||| || || |||||||||| Sbjct 27612 TGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATTC 27649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || ||||| || ||||| | || ||||||||||| || ||||| | Sbjct 27875 TTCCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTG 27934 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||||| | || |||| || ||||| ||||| || || || || || || | | Sbjct 27935 AAAGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGG 27994 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| || |||||| || | | || | | ||||| | ||| | Sbjct 27995 GAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGA 28054 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || | ||||| |||||||| || || || || ||||| || ||||||| Sbjct 28055 CTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATTC 28105 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || || || || ||||| | ||| |||||||||||||| ||||| | Sbjct 27647 TTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTG 27706 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || |||| || ||||| ||||| || || || || || || | | Sbjct 27707 AAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGG 27766 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | ||||||| | ||| ||| || || | | || | | || || | ||| Sbjct 27767 GAATACCTTCCTTGT-CTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCG 27825 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | ||||| |||||||| || | ||||| ||||| || ||||||| Sbjct 27826 ACTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATTC 27877 >seq62093 Length=56387 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||| ||||| | ||| || | | || || |||||||| || ||||| Sbjct 3527 CCTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAG 3586 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||| || | ||||| | ||||| ||| |||||| ||||| | || Sbjct 3587 ATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACATTT 3646 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||| ||||| | || || || || |||||||||||||| || Sbjct 3647 TCGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACG 3706 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 3707 AAGATTTGCAT 3717 >seq17180 Length=12851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 |||||||||||||| || | | ||| || | || || | ||||| |||||||| ||| Sbjct 4119 TTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGATC 4060 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 || || ||||| || | ||||| | |||||| ||| ||| || ||| | | || | Sbjct 4059 AAACGTTGCTGATCTGGAGGAATTCCCTCCTTATCCTGGATTTTGGTCTTAACATTTTCG 4000 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | || || | || ||||| | || || ||||||||||| | || ||||| || Sbjct 3999 ATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCACGAAA 3940 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 3939 ATCTGCAT 3932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450324971878200