Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq58440 273 3e-68 seq27661 190 3e-43 seq4608 95.1 2e-14 >seq58440 Length=15377 Score = 273 bits (302), Expect = 3e-68 Identities = 597/882 (68%), Gaps = 9/882 (1%) Strand=Plus/Minus Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| || ||| || ||||||| |||| ||||| ||||| |||| || | ||||| Sbjct 5280 ATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGATT 5221 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 | || || || | ||||||||| | || | ||||| ||||||||||| || || Sbjct 5220 AGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTTGCGA 5161 Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTAT-TACGGTCTTGTAACGCTTCTCTT 69493 ||| || || | | ||| || |||| || | | | || | | || || | Sbjct 5160 TTCAATGATGGCCTCCCACACTTTATGAGCAGGTACCTGCCGCCT-GAATTTGTTTTCAT 5102 Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553 ||||||| |||||| || || || || |||||||||||||| || || |||| Sbjct 5101 CCTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCCTGGAC 5042 Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGAT 69613 |||||| |||||||| | ||| | | |||| || | ||||||||||| |||| || Sbjct 5041 ATTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAATAAAT 4982 Query 69614 CGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672 | |||||||||||||| ||| || | ||| || | || | |||||| || |||||| Sbjct 4981 CAGGAATCCAAAGAGC-ATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTT 4923 Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732 || || || ||||| || | || ||| | |||||| ||||||| ||| || || | Sbjct 4922 TTACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAATTGCAAAT 4863 Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792 | || || | ||| || || || || || | ||| | || || |||||| | |||| Sbjct 4862 GCGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAAAACTCGA 4803 Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852 ||||| || | ||| |||||||| | ||||| || || | ||||||| ||| |||| Sbjct 4802 AGCATGGGTACAATCCCATTAGAGTATCCATTGGTCCCCGCAATATAAGAACCTTTTGCT 4743 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 |||||| | |||| | ||| || ||||| || ||| || || | ||| || Sbjct 4742 CGAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAATTGCAGTTTGT 4683 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCT 69971 |||| || ||||| || || || ||| ||| ||| ||||| || ||| ||||| Sbjct 4682 TTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAATAA-AAAGCAGCT 4624 Query 69972 AGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 || | |||| | | | || | ||||| || | ||| ||||| || || ||||| | Sbjct 4623 TGATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAAATA 4564 Query 70032 TTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTC 70090 || ||| || || ||||| || | || | ||| ||||| | | | ||||| | Sbjct 4563 CCCTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCCG-TGAATAC 4505 Query 70091 CTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCA 70150 ||| | ||| | ||||| |||||| || || | ||| ||| ||| || ||||| | Sbjct 4504 CTACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTTGCCAATTTTGA 4445 Query 70151 ACAGGTATGATTTTTCCAGAGTTTTAAACC-CAAAATAGTTG 70191 | ||| | ||| |||||||| |||| |||| ||||| Sbjct 4444 GTAAGTAGCTTCGTTCTAGAGTTTTGAACCTGAAAAGAGTTG 4403 Score = 239 bits (264), Expect = 6e-58 Identities = 458/674 (68%), Gaps = 6/674 (1%) Strand=Plus/Minus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 || |||| ||| |||||||||| | || | ||| ||||| ||||| ||||| || Sbjct 6368 TTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCT 6309 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||||| || || |||| |||||||||||||| ||| ||||| || | || Sbjct 6308 GTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGC 6249 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 | || ||||| || |||| |||||||||||||| || ||||| || | ||| || ||| Sbjct 6248 TGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCC 6189 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCA 68604 |||| | | ||||||||| ||||||||| | || ||| ||| || || ||||| Sbjct 6188 ATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCG 6129 Query 68605 TCTGGAA---GGCTCGTATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATC 68661 || |||| | ||||||| | ||||||| ||| | ||||| | | || || Sbjct 6128 TCAGGAATTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTTTCATT 6069 Query 68662 TCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGA 68721 || |||| ||| | | | || || || |||| | | ||| |||| || |||||| Sbjct 6068 TCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAATTTGA 6009 Query 68722 AATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781 ||||| || ||||| || | | | ||||||||| || |||| || | |||| Sbjct 6008 AATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTCCTTCA 5949 Query 68782 TTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTT 68841 || || || || ||||| || || || || |||||||| || || | | | ||| Sbjct 5948 TTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAGCAAGAAGAAGGGAATTC 5889 Query 68842 CTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGG- 68900 | | || | | | ||||| | |||| | | ||||||||| | || | || Sbjct 5888 CGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCCCACATATTTGTGGGG 5829 Query 68901 --TACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 ||| | | ||||||||| ||||||| | || | |||| | ||||| |||||| Sbjct 5828 GTAACACCTTCCCAAAGATCAAATTGTAGCAACCCTTGACTTACTGGAGATCCTTTATAT 5769 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 || || || | ||| | |||||||||||||||| || ||||| |||||||| ||| Sbjct 5768 GTCTCGTATGTTCCCAATTCAGCAGCTAGTTCACAACTCGCTTCTAAGGCACCGTAGTAA 5709 Query 69019 ATTGTTTCGAAAAT 69032 || ||||| || || Sbjct 5708 ATAGTTTCAAATAT 5695 >seq27661 Length=34041 Score = 190 bits (210), Expect = 3e-43 Identities = 336/481 (70%), Gaps = 23/481 (5%) Strand=Plus/Minus Query 39306 CTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTT 39365 |||| |||||||| ||| ||||| ||||| ||||| ||| || |||||||| |||| Sbjct 22450 CTTG-GACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTT 22392 Query 39366 TGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT---AGTTGCATTATAttttt 39422 | || || | ||| ||||||||||| |||||||| ||||| |||| | | ||||| Sbjct 22391 TACCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAGTTAGGTAA-ATTTTC 22333 Query 39423 ttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCA 39482 || | | ||| || | ||||||||||||||||| || ||| | || || Sbjct 22332 GGACAATTA--AGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATAT---TGCACCA 22278 Query 39483 TT---TCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTT 39539 | ||||| |||||||| | | | ||| || || ||||| |||||||| || ||| Sbjct 22277 TGGAATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTT 22218 Query 39540 CGATGTCTACGGCCTCTGTTATTAT--CGATGTTACTACCTCATCACTCGGTGG---ATG 39594 | || | || ||||| || || ||| ||| | | ||| | ||| ||| Sbjct 22217 CAATCGCAACAGCCTCACGAATAATTTCGACAATACGAGC----CACG-GATGGCTTATG 22163 Query 39595 CAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 | ||| ||||||| | ||||| || || ||| | ||||| |||||| || Sbjct 22162 AGCAAGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATAT 22103 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 | |||||| ||||| ||||| || ||||| || ||||| || || | ||| ||||||| Sbjct 22102 AAGTTCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGA 22043 Query 39715 AGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC 39774 |||||| || || |||||||||||||| || || || ||||| |||| || || ||||| Sbjct 22042 AGCAAATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCC 21983 Query 39775 G 39775 | Sbjct 21982 G 21982 Score = 120 bits (132), Expect = 4e-22 Identities = 210/305 (69%), Gaps = 3/305 (1%) Strand=Plus/Minus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 |||||||| || || ||||| || || || || ||||| ||||| |||||||| || || Sbjct 21775 TACATTTCGGAGTGAATGTTCTCGATTGCAATTTGAAACCCGTAGAAACATCTCGCCTCC 21716 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 |||| ||||| || |||||| ||| | | || || ||||| ||||| || Sbjct 21715 GTAACCTGTACTTCCTGTGTAAATCTCTCCACAATGTTCTCGTTCACAATTCCGTCCGAC 21656 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTT---A 40084 || || ||||||||||| || || ||||| || ||| || ||||||| Sbjct 21655 GCAGCGAAAAATGCCAAAACTCGTGATATAAAGTACCGTTCCTCATCATTCAATTTCTCC 21596 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 | |||||| | | || || | || ||||| || | |||||||| || | Sbjct 21595 TCCCAGTCGATCAAGTCCTTGCTGAGGTCCACTTCCTCCACAGTCCAAAAGCTTGCTACG 21536 Query 40145 GCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTT 40204 ||||| || ||||||||||| |||||| ||||| || |||| || || |||||||| Sbjct 21535 GCCTTCTTATACATGTTCCAAATATCAAAATATTCGATAGGAAGGATTACGAATCTATTA 21476 Query 40205 GGATT 40209 ||||| Sbjct 21475 GGATT 21471 >seq4608 Length=17199 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 163024 GAAGGGTTGGTTTTAAAAGATATTAATGGAATATACGAGCCAGGAAAACGTAGATGGCTT 163083 ||||| ||||| | |||||||| ||| | || ||||| || || || |||||| Sbjct 12424 GAAGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACATTGGCTT 12365 Query 163084 AAAATAAAGAAAGACTACTTGAACAATGGTTCAATGGCAGACTCTGCAGATTTAGTAGTA 163143 || | || ||||| || ||||| |||| |||||||||| |||| || || || || Sbjct 12364 AAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTGGTTGTT 12305 Query 163144 CTTGGGGCATATTATGGAAAAGGAATAAAGGGTGGAATGATGGCTGTCTTTTTGATGGGT 163203 | || | || | ||| | |||| ||||||||| || || | |||||||||||| Sbjct 12304 TTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCATATTTTTGATGGGT 12245 Query 163204 TGCTATGATGACGAGTCTGGTAAATGGAAGACAGTAACTAAATGTTC 163250 ||||| ||| | | ||||||| ||| ||||| ||| |||| Sbjct 12244 TGCTACGATACCTCAACCAAAAAATGGATGACTGTAAC-AAAGGTTC 12199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686194715370600