Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq46208 219 3e-52 seq21563 187 2e-42 seq27661 129 5e-25 seq74460 96.9 3e-15 >seq46208 Length=8390 Score = 219 bits (242), Expect = 3e-52 Identities = 486/718 (68%), Gaps = 16/718 (2%) Strand=Plus/Minus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || |||||||| |||| | ||| | ||| || ||||||||| | || ||| Sbjct 6110 TTTCCATTACTAACTACCAAAACTGTTTTTATAAGAGGAATCGCAGAAGAATTATTTTGG 6051 Query 40752 TTTATCAAAGGTTGTACTAATGCTAA-GAAATTATCAGAAAGAGGAGTGCACATTTGGAA 40810 ||||| ||| | || ||||| || || ||| ||| | | ||| || ||| | Sbjct 6050 TTTATTCGAGGATCAACAAATGCAAATGAGCTTAAGGAAAAAAAG-GTGAGGATATGGGA 5992 Query 40811 TGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATT-ACAAGATAGGGATGAAGGTG 40869 || || || | || ||| | || ||||| || | | || || || || | Sbjct 5991 TGGAAACTCCTCAAGGGAATTTTTAGATTCTATGGGATTTACCA-ACAGAGAAGAGGGAG 5933 Query 40870 ATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGT 40929 |||| ||||| || |||||||| || | ||| |||| |||||| |||| | | |||| Sbjct 5932 ATCTCGGTCCAGTATATGGATTCCAATGGCGTCATTATGGAGCGGAATACAATAATATGC 5873 Query 40930 ACTCTGATTATACCAAT--AAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAA 40987 || |||| || |||| |||||| | || || | ||||| | || || || Sbjct 5872 ACACTGACTA--CCAAGGGAAAGGAGTTGACCAGCTTTCTCATGTTATCAAGACTATAAA 5815 Query 40988 ATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 | | || |||| || |||||| || ||||||| ||||| || | || | | Sbjct 5814 AGATAACCCAAACGAT---CGTCGTATATTAATGTGCGCCTGGAATCCTAAAGATATTCC 5758 Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACT 41104 ||||||| | || |||||||| | || ||| ||||| ||| |||||||||||| Sbjct 5757 CCTGATGGCTCTTCCCCCTTGTCACTGTTTGGCTCAATTTTATGTTGCCAATGGTGAACT 5698 Query 41105 GTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || |||||||| |||||| |||| | || |||||| |||| || || ||||||||||| Sbjct 5697 ATCTTGTCAATTATATCAACGATCTGCAGATATGGGATTAGGAGTACCTTTTAACATAGC 5638 Query 41165 GAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATT 41224 |||||| |||| | ||| |||| | || || || |||||| | |||||||||||||| Sbjct 5637 AAGTTATTCTCTCTTAACGATTATGTTGGCCCATGTGACCAATCTCAAACCTGGTGAATT 5578 Query 41225 TGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACA 41284 |||| || ||||| |||| ||| | |||| |||||||| || | ||| |||||| Sbjct 5577 CATTCATACCTTAGGTGATGCACACGTATACAACAATCACATTGATGCCTTAGAAGAACA 5518 Query 41285 ACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACAT 41344 | | | || | || | ||||| || || | | ||||| ||| ||| ||| Sbjct 5517 ATTAAAGAGAGAGCCACGTCCATTCCCCACTATGAAATTGAAACGAAATGTGGAATGCAT 5458 Query 41345 TGATGATTTTTGCA-TCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAAT 41401 || || |||| || | ||||| |||| | | || ||||| |||||||||| Sbjct 5457 AGA-GAGTTTTACATTTGATGACTTTGAGCTCATAGGATATAATCCTCACCCTAAAAT 5401 >seq21563 Length=25499 Score = 187 bits (206), Expect = 2e-42 Identities = 328/468 (70%), Gaps = 20/468 (4%) Strand=Plus/Plus Query 19357 CTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTA 19413 |||| ||| || || ||| ||||||||| | || || | || | || || ||| Sbjct 16817 CTTTTTGGACCTCCTGGTACTGGAAAAACTCTTATGGCTCGTCAAATAGGTCAAATGTTA 16876 Query 19414 CTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGT 19473 | ||| | |||| |||||| |||||||| ||| |||| || |||||||||| ||| Sbjct 16877 AATGCAAGAGAACC---CAAAATCGTAAATGGCCCTCAAATTCTAGATAAATATGTGGGT 16933 Query 19474 CAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTA 19533 | || |||| |||| | || |||||||||||||| |||||||||||| |||| || ||| Sbjct 16934 GAGTCTGAAGCAAATATTCGTCGTTTGTTTGCTGATGCTGAAGAAGAAGAAAAGCGATTA 16993 Query 19534 GGGCGCAA--AAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGC 19591 |||| ||| | ||| || || || ||| | |||||| | || || || || ||| Sbjct 16994 GGGCCCAACTCCGGACTT--CATATCATTATATTCGATGAAATTGATGCTATTTGCAAGG 17051 Query 19592 AAAGAGG--TTCTGG-TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCT-- 19643 ||||| | ||| | |||| ||||| |||| || ||||| |||||| | || Sbjct 17052 CTAGAGGGAGTGTGGCCGGAAATACGGGAGTGAATGATACGGTTGTAAATCAATTACTCA 17111 Query 19644 GTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAG 19703 || |||||| || || ||| | || || ||||| ||| | | ||||| ||||||||| | Sbjct 17112 GT-AAAATT-GATGGAGTTGATCAGCTTAATAACATTCTGATAATTGGTATGACTAATCG 17169 Query 19704 ACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAAT 19763 || || | || || || ||||||| || ||||| ||||| | || ||||| Sbjct 17170 ACGAGACATGATTGATGATGCTCTATTACGTCCTGGTCGATTGGAGGTGTCCATTGAAAT 17229 Query 19764 TAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 | || || || || ||| |||||| |||| || || |||||||| Sbjct 17230 TGGTTTGCCTAATAAAGATGGTCGTGTGCAAATCTTGAATATACATAC 17277 >seq27661 Length=34041 Score = 129 bits (142), Expect = 5e-25 Identities = 315/466 (68%), Gaps = 25/466 (5%) Strand=Plus/Plus Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 || || ||||| ||| || | || ||||| | || || ||||| ||||||||||| || Sbjct 21977 TCCTTCGGAGATCGAATTATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTTCAGGGTCA 22036 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 ||||| ||||||| |||||||||||||| || | ||||| || | || |||||||| Sbjct 22037 TTTGCTTCCATATTCTGGTTAAAGAAACGTGGACTCATGCCCGGTCTCACCTTTTCAAAC 22096 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296 || | ||| | | || || || || ||| |||||||| || | | || || | Sbjct 22097 GAACTTATATCTAGAGACGAGGGATTGCATACAGATTTTGCCTGTCTTATGTTTAGACAC 22156 Query 44297 CTAGGAGACGATAAGCCTTCATGTAAGAC-AATTACAGATATTGTTGTAGAGGCAGTAAA 44355 || | ||||||| || || | ||| || ||| || ||||| || Sbjct 22157 CT---TGCTCATAAGCCATC-CGTGGCTCGTATTGTCGAAATTATTCGTGAGGCTGTTGC 22212 Query 44356 GATAGAACAAGAATTTATGACAACAGCATTACCTGT--AAATTTAATAGGAATGAA---T 44410 ||| ||| |||||| | || ||| | || || ||| | | |||||||| | Sbjct 22213 GATTGAAAGTGAATTTCTAACTGAGGCACTCCCCGTTCGAATGT--TGGGAATGAACTGT 22270 Query 44411 GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGT 44470 || || ||| ||||||||| ||| |||||||| | | ||| | || || | Sbjct 22271 GA---TTCCATGGTGCAATATATTAAATTTGTTGCAGATAGACTTCTTGTAGAGCTTAAT 22327 Query 44471 TG--CGATAA---ACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGT 44525 || ||| || || ||| | || | || || ||||||||||||||||||||||| Sbjct 22328 TGTCCGAAAATTTAC-CTA-ACTG---AGAATCCCTTTGATTTTATGGAAAATATTTCAC 22382 Query 44526 TGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 | || || ||||| || |||||||||||| ||||| |||||||| Sbjct 22383 TTGATGGTAAAACCAATTTTTTTGAAAAAAAGGTTGGGGAATATCA 22428 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 43838 TTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTG 43897 |||||||| |||||||| ||||| |||||| ||||| || || || || || | Sbjct 21624 TTTATATCACGAGTTTTGGCATTTTTCGCTGCGTCGGACGGAATTGTGAACGAGAACATT 21683 Query 43898 GTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAA 43957 || | ||| | || ||||| || | | || || ||||||| || ||||||||| Sbjct 21684 GTGGAGAGATTTACACAGGAAGTACAGGTTACGGAGGCGAGATGTTTCTACGGGTTTCAA 21743 Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAA 44016 ||||| || || || ||||| || ||||||||| | || ||||| || ||||| || Sbjct 21744 ATTGCAATCGAGAACATTCACTCCGAAATGTACTCATTACTTATAGACACTTACATAAA 21802 >seq74460 Length=39000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 41083 TTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGAC 41142 |||| ||| ||||||||||| || |||||||| |||||| | | ||||||||| Sbjct 33457 TTTATGTTGCTAATGGTGAACTATCTTGTCAATTATATCAACTGCCTGAAGACATGGGAT 33398 Query 41143 TAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTA 41202 |||| || || || ||||||| |||||| ||| || ||| |||| | | || | | Sbjct 33397 TAGGAGTACCTATTTACATAGCAAGTTATTATCTCCTAACGATTATGTTGACCCATTTCA 33338 Query 41203 CCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATC 41262 ||||| | || ||||||||||| |||| || || | |||| || | |||| ||| Sbjct 33337 CCAATCTCAAGCCTGGTGAATTCATTCATACCTTTGTTGATGCACGCACATACAACAATA 33278 Query 41263 ACA 41265 ||| Sbjct 33277 ACA 33275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397053149155825