Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq46208 113 5e-20 >seq46208 Length=8390 Score = 113 bits (124), Expect = 5e-20 Identities = 197/280 (70%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 31156 TCGATGTGATTGACATAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTCTT 31215 || ||||||||| || | || ||||| || | | || | ||||| || ||| | Sbjct 5533 TCAATGTGATTGTTGTATACGTGTGCATCACCTAAGGTATGAATGAATTCACCAGGTTTG 5592 Query 31216 AGATGGGTCAATTTGGCAATCACATGAACC--AAAAGCGCATAACTCGCTATGTTGAATG 31273 |||| ||||| | ||| | |||| | | || || | |||||| |||||||| || | Sbjct 5593 AGATTGGTCACATGGGCCA--ACATAATCGTTAAGAGAGAATAACTTGCTATGTTAAAAG 5650 Query 31274 GTACACCCAATCCCAAATCGGCAGATCGTTGATATAACAAACAGGAAAGTTCATCTCCGG 31333 |||| || ||||||| ||| ||||||||||||||||| ||| || |||||| | || Sbjct 5651 GTACTCCTAATCCCATATCTGCAGATCGTTGATATAATTGACAAGATAGTTCACCATTGG 5710 Query 31334 TCACGTAAAATTGAAATAACACA-TGACAAGGCGGCAAAGCCATTTCACAGG--TATCGA 31390 || ||||||||| || ||| |||||||| || | ||||| ||| || |||| Sbjct 5711 CAACATAAAATTGAGCCAA-ACAGTGACAAGGGGGAAGAGCCA--TCAGGGGAATATCTT 5767 Query 31391 CGGGATTCCAAGCGCTTACTAACAAACGCCGACTGGTTGG 31430 |||||||| |||| | ||| | ||| ||| | |||| Sbjct 5768 TAGGATTCCAGGCGCACATTAATATACGACGATCGTTTGG 5807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512484286141200