Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq20317 113 4e-20 seq58440 111 1e-19 seq42503 109 5e-19 seq66674 107 2e-18 seq62093 91.5 1e-13 >seq20317 Length=5186 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||||| || || || || | || || || |||||||| ||||||||| | Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 732 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || | || || || || | || | ||| || ||||| || || Sbjct 733 AATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 792 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||||| | || | |||| | ||||||| ||||| ||| Sbjct 793 ATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACT 852 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||| ||||| ||||||||||||||||||||||| Sbjct 853 TCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 |||||| ||||| | || || || ||||||||||| || || | | | | || Sbjct 3 CAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATC 62 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | |||||||| || | || | ||| |||||||| || || | ||| || ||||| Sbjct 63 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATC 122 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||||| ||| | |||| | ||||||| ||||| ||||| ||||| || | Sbjct 123 TTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGT 182 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || | || || |||||||||||||| Sbjct 183 TTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 >seq58440 Length=15377 Score = 111 bits (122), Expect = 1e-19 Identities = 446/693 (64%), Gaps = 27/693 (4%) Strand=Plus/Minus Query 131340 TACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGC 131399 |||||||| | ||||||| | || ||| | || ||||||| || |||||| || Sbjct 5306 TACAAACTTAC--TTCGTCAGGAGAGCTATATTCTACTATTTCGGTACATAAATTAGAGC 5249 Query 131400 TCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCA 131459 ||||| || ||||| || | |||||| ||| ||| | ||||||||| | || Sbjct 5248 ATTTTATAGTTCCCAAGTTCTTTTGATTAGATTTCCGATTGCAAGAGTCCTTGTATAACA 5189 Query 131460 TGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAAAGAGTTTTCGAGCAG 131519 ||||||| || || ||||| | ||| | |||||| ||| | | ||| |||||| Sbjct 5188 TGTAGGGAGTCCCAGTTTCAATTTGCGATTCAATGATGGCCTCCCACACTTTATGAGCAG 5129 Query 131520 ACAATTGATATTTGTATTGGCCGCGTTTT--TCGTAAT-TTTCGTACAACGTTTC--AAA 131574 | || || ||| | |||| || | || ||| | | ||||| ||| Sbjct 5128 GTACCTGCCGCCTGAATTTG-----TTTTCATCCTCATATTTAAGATATAGTTTCTCAAA 5074 Query 131575 GTTTTGGCC--AAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCAC 131632 | || || |||| | || || |||||||| |||||||| || ||| Sbjct 5073 ATCTTCACCCCAAAC--ATCATCTAACCCTGGACATTCATGAGGACACATAAGGCTCCAA 5016 Query 131633 ACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGA 131692 | || | || ||| ||||| ||||| || ||||| || | ||| | || || || | | Sbjct 5015 ATACCATCCTCTTCCACTCGTTTCATGAATAAATCAGGAATCCAAAGAGCATAGAATAAA 4956 Query 131693 TCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATG 131752 || || || ||| |||||| | ||| || |||| | | || ||| || |||| Sbjct 4955 TCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTTTTACGTAGTTCTAGAAAATCAAAAACA 4896 Query 131753 TCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC------TTTGCGCTTACCGCCT 131806 ||||||||||| ||||| ||||| | ||| | |||||| |||| ||||| ||| Sbjct 4895 TCCGCATGCCAAGGTTCTAAATAAATTGCAAATGCGCCAGGCCTTTTG---TTACCACCT 4839 Query 131807 TGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCG 131866 || | ||||| || | || || | || || | |||||| | | || || | | Sbjct 4838 TGGTCAACATATTTCGCCGTATTATTAAAAACTCGAAGCATGGGTACAATCCCATTAGAG 4779 Query 131867 TTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCA 131926 | ||||||||| | | ||| || || || |||| || |||| || | || Sbjct 4778 TATCCATTGGTCCCCGCAATATAAGAACCTTTTGCTCGAATACAATGAATATTAATACCG 4719 Query 131927 ATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTT-AGAGTGTTATAGATACCTTC 131985 || ||||| || |||| || || | ||| |||| || ||||| | ||| || ||||| Sbjct 4718 ATCCCTCCAGCGGATTTTGAAATAATTGC-AGTTTGTTTCAGAGTATCATAAATGCCTTC 4660 Query 131986 CACGCTGTCCGCGGCAATGTCGACTAAAAAGCA 132018 | | ||| | || || | ||||||||| Sbjct 4659 AATGGAGTCAGAGGACATCGTTAATAAAAAGCA 4627 >seq42503 Length=950 Score = 109 bits (120), Expect = 5e-19 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| | |||||| ||||| | || || || ||||||||||| || || Sbjct 640 CCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 699 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| | |||||||| || | || | ||| |||||||| || || Sbjct 700 AGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 759 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||||| ||| | |||| | ||||||| ||||| ||| Sbjct 760 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACT 819 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||| || || | || || |||||||||||||| Sbjct 820 TCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 >seq66674 Length=28361 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | |||||| ||||| | || || || ||||||||||| || || Sbjct 27877 CCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 27936 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| | |||||||| || | || | ||| |||||||| || || Sbjct 27937 AGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27996 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||||| ||| | |||| | ||||||| ||||| ||| Sbjct 27997 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACT 28056 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||| || || | || || |||||||||||||| Sbjct 28057 TCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || ||||| ||||| || ||||||||||| || ||||| | | | || || | || Sbjct 27436 AAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTA-CGTCCATC 27494 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 || | |||||||| || | || | ||| || ||||| || || | ||| ||||| || Sbjct 27495 CTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTC 27554 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || || | |||||| ||| || | ||||||||||| ||||| || | Sbjct 27555 TTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGATTGT 27614 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || ||||| || || || ||||| Sbjct 27615 TTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 ||| || || || | ||||| ||||| || | ||||| ||||||||||| || || || Sbjct 27189 ATTTCCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATC 27248 Query 27077 GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGG 27136 | | |||| | ||||| | |||||||| || | || | ||| || ||||| || Sbjct 27249 GGATAAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGG 27308 Query 27137 CGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTC 27196 || | ||||| || || || ||| ||| | | || | || || | || || Sbjct 27309 AGGAATGCCCTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTC 27368 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||| ||||| || | ||| || || || ||||| || || || |||||| Sbjct 27369 AACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATA 27420 >seq62093 Length=56387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||||||||| || || || | |||||||| || ||||| || || | || || ||| Sbjct 3563 TCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTA 3622 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| | |||| |||| | || |||| | ||| || || || || || Sbjct 3623 TCCTGGATCTTAGTCTTCACATTTTCGATGGTATCTGAAGGTTCGACCTCAAGGGTAATG 3682 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | |||||||||| |||||| || ||||||||||| Sbjct 3683 GTCTTGCCCGTCAAAGTTTTGACGAAGATTTGCAT 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424503697779480