Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1218 102 9e-17 >seq1218 Length=13050 Score = 102 bits (112), Expect = 9e-17 Identities = 186/272 (68%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 |||| ||||| ||||| | |||| |||||| ||||| |||||||| ||||| |||| Sbjct 3452 GAGTAAAAATATAACGTGCAGATGCATGATCCTTACCACCCGCAAGACGAGTACCAAATT 3393 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | ||| | || || ||||| | ||| |||| || ||||||||||| ||||| || | Sbjct 3392 GACCAATTGGTAATAACAGGTTGACGTTATTGGACCCTACAAAGTTTTGTGCCAAATTTA 3333 Query 117423 CAATCGTAC----CTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 |||||||| | |||||| || ||||| ||||| || | | || | || Sbjct 3332 TAATCGTACCCATCAATGAGGCT----TCTCCATGATGATATGCAGACATTTCACCAACA 3277 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAA 117538 | || || || |||||||| || || ||| | ||| ||| | ||||| || Sbjct 3276 GATCCAGCAAGTTGAGCCACTTTTATCTCTCTTTTATCGTTACGCTTTAAGCAGGTGAAA 3217 Query 117539 ATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | || || | |||| || ||||||||||| Sbjct 3216 ACGACTTTTCTTTGACCAGGTTTCAGACCATC 3185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546647134767000