Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq42503 152 3e-32 seq66674 150 1e-31 seq20317 149 4e-31 seq17180 91.5 9e-14 seq12343 87.8 1e-12 >seq42503 Length=950 Score = 152 bits (168), Expect = 3e-32 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || ||||| |||||| ||||||||||| |||||||||||| Sbjct 640 CCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 699 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | ||||||||| ||||| |||||||| ||||| || || || Sbjct 700 AGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 759 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | || ||||| ||| |||| || | |||||| | |||||||||| ||| || | Sbjct 760 ATACCTTCCTTATCTTGGATC-TTGGCTTTAACATTTTCAATTGTGTCTGAAGCT-TCGA 817 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || |||||||||||||| || || ||||| || ||||| Sbjct 818 CTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 Score = 123 bits (136), Expect = 2e-23 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || || || || ||| ||||||||| |||||||||||||||||||||| | || || Sbjct 202 ACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCCATCCTCT 261 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| ||||| || ||||| |||||||| || || | || ||||| ||| || Sbjct 262 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCT-TG 320 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTT 34675 | ||| | ||||| | ||| || || ||| || ||||| | || || |||| Sbjct 321 AATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCT-TCGACTTCAAGAGTGATAGTTT 379 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||||| || || |||||||| ||||| Sbjct 380 TACCAGTTAAGGTCTTGACAAAAATTTGCAT 410 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || |||||| || || || ||||| ||||| |||| | ||||| Sbjct 430 ACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCT 489 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| || || |||||||| || | || || || || || | ||| ||||| ||| || Sbjct 490 AATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT-TG 548 Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| | || || | ||| |||||| | || ||||| | || || ||||| Sbjct 549 AATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACTTCAAGTGTGATGGTTTT 608 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||||| || ||||||||||| Sbjct 609 TCCAGTGAGGGTTTTAACGAAAATCTGCAT 638 >seq66674 Length=28361 Score = 150 bits (166), Expect = 1e-31 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || ||||| |||||| ||||||||||| |||||||||||| Sbjct 27877 CCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 27936 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | ||||||||| ||||| |||||||| ||||| || || || Sbjct 27937 AGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27996 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | || ||||| ||| |||| || | |||||| | |||||||||| ||| || | Sbjct 27997 ATACCTTCCTTATCTTGGATC-TTGGCTTTAACATTTTCAATTGTGTCTGAAGCT-TCGA 28054 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || |||||||||||||| || || ||||| || ||||| Sbjct 28055 CTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 Score = 132 bits (146), Expect = 3e-26 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| || || ||| ||||||||| |||||||||||||||||||||| | || || Sbjct 28123 ACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCCATCCTCT 28182 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| ||||| || ||||| |||||||| || || | || ||||| ||| || Sbjct 28183 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCT-TG 28241 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTT 34675 | ||| | || || | |||||||||| ||| |||||||| | || || |||| Sbjct 28242 AATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCT-TCCACTTCAAGTGTGATGGTTT 28300 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||||| |||||||||||||| Sbjct 28301 TTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 Score = 129 bits (142), Expect = 4e-25 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || || ||||| ||||| |||||||||||||||||||||||||| |||| | ||| Sbjct 27664 AAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAAAGCGTTCTTCCATCT 27723 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | ||||||||| ||||| |||||||| ||||| || || || | || ||||||||| Sbjct 27724 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCT 27783 Query 34615 GTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCG 34672 ||| ||| | |||||| | ||| || || ||| || ||||| | || || | Sbjct 27784 -TGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCT-TCGACTTCAAGAGTGATTG 27841 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || | ||||| ||||| || ||||| Sbjct 27842 TTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| ||||| || || || || ||||||||||||||||| || Sbjct 27193 CCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 27252 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||| ||||| || ||||| || || || || || Sbjct 27253 AAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 27312 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| ||| | |||||| | ||| || || | ||| || Sbjct 27313 ATGCCCTCCTTGTCT-TGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAAC 27371 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || | ||||| || ||||||||||| Sbjct 27372 TTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | || || ||||| | ||| ||| |||||||||||||| ||||| Sbjct 27421 CCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGAT 27480 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || | ||||||||| ||||| || ||||| || || || || || Sbjct 27481 AAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 27540 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||| | ||||| | || || || ||| || | Sbjct 27541 ATACCTTCTTTGTCT-TGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCT-TCAA 27598 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || |||||||| || | ||||| || ||||||||||| Sbjct 27599 CTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 >seq20317 Length=5186 Score = 149 bits (164), Expect = 4e-31 Identities = 165/215 (77%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 ||| || ||||| |||||| ||||||||||| |||||||||||||| |||| | || Sbjct 3 CAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATC 62 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||| | ||||||||| ||||| |||||||| ||||| || || || | || ||||| || Sbjct 63 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATC 122 Query 34614 TGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATC 34671 | |||| || | |||||| | |||||||||| ||| || ||||| | || || Sbjct 123 TTGGATC-TTGGCTTTAACATTTTCAATTGTGTCTGAAGCT-TCGACTTCAAGAGTGATT 180 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||||||||| || || ||||| || ||||| Sbjct 181 GTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 Score = 111 bits (122), Expect = 1e-19 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| || || |||||||||||||||||| ||||| | || || | ||||| Sbjct 235 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCTTCT 294 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| || ||||| || || | ||| || || || || | ||| ||||| ||| | Sbjct 295 AATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 354 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTT 34675 || ||| | || || | ||| |||||| ||| |||||||| | || || |||| Sbjct 355 AT-TTTAGCCTTGACATTTTCAATAGTGTCTGAAGCT-TCCACTTCAAGAGTGATTGTTT 412 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||||| |||||||||||||| Sbjct 413 TTCCAGTGAGAGTTTTAACAAAAATCTGCAT 443 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | || || || ||||||||| |||||||||||||| || || || Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 732 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | || || | ||| || || ||||| || ||||| || || || || || Sbjct 733 AATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 792 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | ||| ||||| || |||| || || || || | ||| |||||| ||| |||| Sbjct 793 ATTCCTTCCTTATCCTGGATC-TTGGTCTTGACATTTTCAATCGTGTCTGAAGCT-TCCA 850 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || |||||||| || | ||||||||||| || ||||| Sbjct 851 CTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 >seq17180 Length=12851 Score = 91.5 bits (100), Expect = 9e-14 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 ||||||||||| || || ||||| || || | || || | ||| || || ||||| || Sbjct 4119 TTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGATC 4060 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAA 34637 ||||| || || || || || | ||||||||| || ||| ||| || ||||| | Sbjct 4059 AAACGTTGCTGATCTGGAGGAATTCCCTCCTTATCCTGGAT-TTTGGTCTTAACATTTTC 4001 Query 34638 AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 || || ||| | ||| || || | ||| || |||||||| || | || ||||| || Sbjct 4000 GATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCACGAA 3941 Query 34698 AATCTGCAT 34706 ||||||||| Sbjct 3940 AATCTGCAT 3932 >seq12343 Length=6788 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 11/230 (5%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||| | |||||||| |||||| || |||| |||||| || || || Sbjct 2156 CCACCTCGGAGACAGAGAACCAAATGAAGAGTGGATTCTTTTTTAATGTTGTAGTCCAAA 2215 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCC---GGC 34596 || || || | || || | |||||| || |||| || ||||| || || || || Sbjct 2216 AGAGTACGACCATCCTCTAATTGTTTTCCAACAAAGATCAAACGTTGCTGATCTAGAGGA 2275 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCC 34656 || | ||||||||| || |||| |||||||||||| ||| | | || ||| Sbjct 2276 GGTATTCCCTCCTTATCCTTGAT-TTTTGTTTTAAC------ATTTTCGATAGGC-CTCA 2327 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| || |||||||| | | || || || ||||||||||| Sbjct 2328 ACCTCAAGGGTAATAGTTTTACCCGCAAGGGTCTTTACGAAAATCTGCAT 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314410598437445