Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq66674 154 1e-32 seq20317 145 7e-30 seq42503 132 4e-26 seq4608 132 4e-26 seq9530 111 1e-19 >seq66674 Length=28361 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || || | || ||||||||||| ||| | || Sbjct 27875 ATGCAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTCT 27816 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||||| ||||| || || || |||||| Sbjct 27815 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAA 27756 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || |||||||||||||| | || |||| ||||| ||| Sbjct 27755 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTTTCAGATTATAAC 27696 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | ||||| ||||| | ||| | ||||| || Sbjct 27695 ATTCAAAAGGAATCTACTCTTCATTTAGTTTTAAGATTGAGAGGTGGAAT 27646 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | || ||||||||||| || || || Sbjct 27419 ATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCT 27360 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| |||||||||||||| || ||||| || || ||||| Sbjct 27359 GATACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAGGGCATTCCTCCAGATCAG 27300 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||||||||| | || | |||||||| ||| Sbjct 27299 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTATAAC 27240 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || ||| | || ||||||||||| | || ||||| Sbjct 27239 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGCCTTCGTGGTGG 27193 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || | ||||| || | || ||||||||||| ||| | || Sbjct 28103 ATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCA 28044 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || ||||| || ||||| || || || |||||| Sbjct 28043 GACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 27984 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || |||||||||||||| | ||| |||| ||||| || Sbjct 27983 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCCTTTCAGATTATAAT 27924 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | ||||| || ||| | ||| | ||||| || Sbjct 27923 ATTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGTGGAAT 27874 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| || || | || || |||||||||||| | || Sbjct 28331 ATGCAGATTTTTGTTAAAACTCTGACTGGAAAAACCATCACACTTGAAGTGGAAGCTTCA 28272 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||||||||| || ||||| || || || || ||| Sbjct 28271 GACACAATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAA 28212 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || | || |||| ||||| ||| Sbjct 28211 CAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATTATAAC 28152 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| ||| | || |||| Sbjct 28151 ATCCAAAAGGAGTCCACCCTTCACCTGGT 28123 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | || ||||||||||| ||| | || Sbjct 27647 ATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAAGCTTCT 27588 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||||||||||||||| || || || ||||| Sbjct 27587 GATACTATAGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAG 27528 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || | || | || || || ||| Sbjct 27527 CAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGACGTACTTTATCAGACTATAAC 27468 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||| ||||| || || ||||| ||||| Sbjct 27467 ATTCAAAAAGAGTCCACGTTGCATTTAGTTTT 27436 >seq20317 Length=5186 Score = 145 bits (160), Expect = 7e-30 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || || || | || ||||||||||||||| | || Sbjct 443 ATGCAGATTTTTGTTAAAACTCTCACTGGAAAAACAATCACTCTTGAAGTGGAAGCTTCA 384 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||| ||||| || ||||| || || || ||||| Sbjct 383 GACACTATTGAAAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 324 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||||| ||||| | || | || || || ||| Sbjct 323 CAGAGATTGATTTTTGCTGGYAAACAATTAGAAGATGGACGTACTTTATCAGACTATAAC 264 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||||||||||||| | |||||||| Sbjct 263 ATTCAAAAGGAGTCGACCCTTCATTTGGT 235 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || | ||||| || | || ||||||||||| ||| | || Sbjct 215 ATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCA 156 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || ||||| || ||||| || || || |||||| Sbjct 155 GACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 96 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || |||||||||||||| | || |||| ||||| || Sbjct 95 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCAGATTATAAT 36 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||||||||| || || | ||||| || ||| Sbjct 35 ATTCAAAAGGAATCCACTCTTCATTTAGTATTG 3 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || | || || |||||||||||| | || Sbjct 899 ATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACCATCACACTTGAAGTGGAAGCTTCA 840 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || || || || ||||| || || || ||||| Sbjct 839 GACACGATTGAAAATGTCAAGACCAAGATCCAGGATAAGGAAGGAATCCCCCCAGATCAG 780 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || |||||||| || | || | ||||| |||||| Sbjct 779 CAACGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACATTGTCCGACTACAAC 720 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || || || || | ||| | || || || Sbjct 719 ATTCAAAAGGAATCCACTCTCCACTTAGTCCTGAGGTTGAGAGGAGGAAT 670 >seq42503 Length=950 Score = 132 bits (146), Expect = 4e-26 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || | ||||| || | || ||||||||||| ||| | || Sbjct 866 ATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCA 807 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || ||||| || ||||| || || || |||||| Sbjct 806 GACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 747 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || |||||||||||||| | || |||| ||||| || Sbjct 746 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACNCTTTCAGATTATAAT 687 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | ||||| || ||| | ||| | || || || Sbjct 686 ATTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGAGGAAT 637 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | || || |||||||| ||| | || Sbjct 638 ATGCAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTCA 579 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||||||||| || ||||| || || || ||||| Sbjct 578 GACACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 519 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || |||| || ||||| ||||| ||||| | || ||||||||||||| Sbjct 518 CAAAGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAAT 459 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || |||||||| ||| | || |||||| Sbjct 458 ATCCAGAAGGAGTCAACCCTTCACTTGGTT 429 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || | || || || |||| ||||||||||| ||| | || Sbjct 410 ATGCAAATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTCT 351 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||||||||| || ||||| || || || || ||| Sbjct 350 GATACTATTGAGAATGTTAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAA 291 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || | || |||| ||||| ||| Sbjct 290 CAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATTATAAC 231 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| ||| | || || || Sbjct 230 ATCCAAAAGGAGTCCACCCTTCACTTAGT 202 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || | || || || |||| ||||||||||| ||| | || Sbjct 182 ATGCARATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTCT 123 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| ||||| ||||| || ||||| || || || ||||| Sbjct 122 GATACTATTGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 63 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||| | || || | || || |||||||| ||||| Sbjct 62 CAGAGATTGATTTTTGCTGGTAAACAATTAGAAGA 28 >seq4608 Length=17199 Score = 132 bits (146), Expect = 4e-26 Identities = 348/523 (67%), Gaps = 16/523 (3%) Strand=Plus/Minus Query 49780 GGACTAGAAGGTTTGGTACTAAAACCGATCAATTCTGTATACGCACCCGGTAAAAGACAT 49839 || || ||||| |||||||| ||| ||||||||| || | || || || ||||| Sbjct 12430 GGTCTGGAAGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACAT 12371 Query 49840 TGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGCCGATAGCGTTGATTTG 49899 ||| | || | |||||||| || ||| ||||| || ||||| |||| | ||| ||| Sbjct 12370 TGGCTTAAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTG 12311 Query 49900 GTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGTGGCTTCTTGTCTACATTTTTG 49959 || |||||||||| ||||| ||| | ||| |||||||||| || || | ||||||| Sbjct 12310 GTTGTTTTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCATATTTTTG 12251 Query 49960 ATGGGATGTCTCGACAC--AAACCGAAACGTTTGGACGACAGTAACAAAGGTGCACACAG 50017 ||||| || ||| || |||| ||| |||| ||| ||||||||||| || || Sbjct 12250 ATGGGTTGCTACGATACCTCAACCAAAA--AATGGATGACTGTAACAAAGGTTCATGGAG 12193 Query 50018 GCCACACGGACGATGAACTGAAACGGTGCAAC--GCGCTTCTTTTGCCGCTGATGATTAA 50075 | |||| | ||| | || | || | | |||| | |||| || Sbjct 12192 GATTTGATGACGCTACTCTGGA--GGATCTACAGGACAAAATAGTGCCAATAATGAAGAA 12135 Query 50076 GATCGAGAGAGAC---GAATCTCCGCCCGCATGGCTAGATTGCCATCGAACCATGATTCC 50132 |||| | ||||| || ||| || ||||||| | || | || | |||| Sbjct 12134 GATCAAAGGAGACTATGACTCTGTTCCATCATGGCTGAAATGTAACAGAGGTGTAGTTCC 12075 Query 50133 CGACATGATCGCCACCCATCCCAAACTTATGCCCGTGTGGGAAGTGACTGGCGCAGAATT 50192 ||| | || | || |||| || ||||||| || ||||| | ||||| || ||||| Sbjct 12074 TGACTTTATTGTCAATGATCCTAAGGTTATGCCTGTTTGGGAGATAACTGGTGCTGAATT 12015 Query 50193 CACCAAAACGTCTAACGTGCACACGGCCAACGGGATATCCATTCGTTTTCCGCGAATAAC 50252 | ||| || || | || || || || || |||||||||||||| || || | || Sbjct 12014 TTCAAAATCGGATA---TTCATACAGCAAATGGAATATCCATTCGTTTCCCCCGCGTTAC 11958 Query 50253 -TCGCATACGAGAAGACAAAACCTGGCAAACGGCTACTGATCT 50294 ||| | || | || |||| ||| ||||||| ||| |||| Sbjct 11957 AAAGCAAAGGA-AGGATAAAAATTGGAAAACGGCAACTAATCT 11916 >seq9530 Length=29750 Score = 111 bits (122), Expect = 1e-19 Identities = 179/255 (70%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565 ||||| || | || || | ||| | ||||||||||| ||||||||||| || ||| | Sbjct 22255 GAAGGAAAGTTACATGGGTACATGAGAATGTATTGGGCTAAAAAGATATTAGAGTGGACG 22314 Query 135566 GCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGAT 135625 | | || | | ||||| |||| ||| | |||||||| |||| || ||| Sbjct 22315 GAAAGTCCCGATGTAGCGCTGGCTGACGCTCTATATCTTAATGATCACTATGCATTGGAT 22374 Query 135626 GGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAA 135685 ||| ||| | ||||| | ||||| || |||||||| || || || | || |||||| Sbjct 22375 GGAAATGATGCTAATGGATTTGTAGGGTGCATGTGGTCGATATGTGGAATCCATGATCAA 22434 Query 135686 GGATG----GAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTG 135741 ||||| ||| || | || | ||||| || ||||| |||||||||||||| || || Sbjct 22435 GGATGGCGTGAAAGATC-CA---TATTTGGTAAAATTCGATATATGAACTATGATGGATG 22490 Query 135742 TACAAGAAAATTTAA 135756 | | | |||||||| Sbjct 22491 CAAACGTAAATTTAA 22505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434466275140800