Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_028763.1 Length=49847 Score E Sequences producing significant alignments: (Bits) Value seq52686 102 3e-17 seq66150 82.4 2e-11 seq9928 82.4 2e-11 >seq52686 Length=24326 Score = 102 bits (112), Expect = 3e-17 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 27962 ATGAAACTATCAGAAAAACAACAAATATTTAGTAAAAATATAGCGATTTTAATAGCTTAC 28021 ||||||||||| || | ||||||||||| |||||||||||| | ||||| | | Sbjct 9980 ATGAAACTATCTAAACATCAACAAATATTCTCTAAAAATATAGCCTTATTAATTCTTAAA 9921 Query 28022 GCCGACATGATTG--GCATAGGCTTAACATTCGGACACGCTTACAGAGATAAGGAAACAC 28079 || | ||| | | || || ||||| || ||||| || | | || ||| |||||| Sbjct 9920 GCTGT--TGAATTAAGAATCGGGTTAACTTTTGGACATGCCTTTCGTGACAAGCAAACAC 9863 Query 28080 AAAGACGTTTAGTAAATAAAGGATTATCTAAAACTATGAATAGTTATCATTTAAAACGTT 28139 || |||||| | || | || |||| || |||||| ||| |||| |||| Sbjct 9862 AAGCCCGTTTAATTAAACAGGGGAAATCTTGGACAATGAATTCCATGCATCTAAATCGTT 9803 Query 28140 TAGCTGTTGACTTTAATTTCTTTATAAACGGTAAATTAACATACGAT 28186 |||| |||||||||||||| || || | |||||||| || |||||| Sbjct 9802 TAGCCGTTGACTTTAATTTTTTCATCGATGGTAAATTGACTTACGAT 9756 >seq66150 Length=5519 Score = 82.4 bits (90), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 27967 ACTATCAGAAAAACAACAAATATTTAGTAAAAATATAGCGATTTTAATAGCTTACGCCGA 28026 |||||| || | |||||||||||| || || || || | ||||| | || || Sbjct 3293 ACTATCTAAACATCAACAAATATTTTCAAAGAACATTGCTTTACTAATATTAAAAGC-GA 3351 Query 28027 CATGA--TTGGCATAGGCTTAACATTCGGACACGCTTACAGAGATAAGGAAACACAAAGA 28084 ||| ||| || || ||||| |||||||| |||| | || ||| |||| ||| Sbjct 3352 T-TGAGCTTGAAATCGGTTTAACCTTCGGACATGCTTTTCGTGACAAGCAAACTCAAGCC 3410 Query 28085 CGTTTAGTAAATAAAGGATTATCTAAAACTATGAATAGTTATCATTTAAAACGTTTAGCT 28144 |||||| |||| | || |||| || |||||| |||||||| || |||||| Sbjct 3411 CGTTTAATAAAACAGGGGAAATCTTGGACAATGAATTCCATGCATTTAAACCGATTAGCT 3470 Query 28145 GTTGACTTTAATTTCTTTATAAACGGTAAATTAACATACGA 28185 ||||| |||||||| || ||| |||||||| || || || Sbjct 3471 GTTGATTTTAATTTTTTCATAGCTGGTAAATTGACTTATGA 3511 >seq9928 Length=5509 Score = 82.4 bits (90), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 27967 ACTATCAGAAAAACAACAAATATTTAGTAAAAATATAGCGATTTTAATAGCTTACGCCGA 28026 |||||| || | |||||||||||| || || || || | ||||| | || || Sbjct 2227 ACTATCTAAACATCAACAAATATTTTCAAAGAACATTGCTTTACTAATATTAAAAGC-GA 2169 Query 28027 CATGA--TTGGCATAGGCTTAACATTCGGACACGCTTACAGAGATAAGGAAACACAAAGA 28084 ||| ||| || || ||||| |||||||| |||| | || ||| |||| ||| Sbjct 2168 T-TGAGCTTGAAATCGGTTTAACCTTCGGACATGCTTTTCGTGACAAGCAAACTCAAGCC 2110 Query 28085 CGTTTAGTAAATAAAGGATTATCTAAAACTATGAATAGTTATCATTTAAAACGTTTAGCT 28144 |||||| |||| | || |||| || |||||| |||||||| || |||||| Sbjct 2109 CGTTTAATAAAACAGGGGAAATCTTGGACAATGAATTCCATGCATTTAAACCGATTAGCT 2050 Query 28145 GTTGACTTTAATTTCTTTATAAACGGTAAATTAACATACGA 28185 ||||| |||||||| || ||| |||||||| || || || Sbjct 2049 GTTGATTTTAATTTTTTCATAGCTGGTAAATTGACTTATGA 2009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159231390111570