Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq46208 100 3e-16 >seq46208 Length=8390 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| || | ||| ||| | |||| ||||| || ||||| || || || ||||| Sbjct 5602 ACATGGGCCAACATAATCGTTAAGAGAGAATAACTTGCTATGTTAAAAGGTACTCCTAAT 5661 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| ||| | ||||||||||| | || || || || || ||||| || || || ||| Sbjct 5662 CCCATATCTGCAGATCGTTGATATAATTGACAAGATAGTTCACCATTGGCAACATAAAAT 5721 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || | ||| || ||||| || |||||||| || | ||| || || ||||| ||| Sbjct 5722 TGAGCCAAACAGTGACAAGGGGGAAGAGCCATCAGGGGAATATCTTTAGGATTCCAGGCG 5781 Query 6797 CACAT 6801 ||||| Sbjct 5782 CACAT 5786 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTC 34603 |||||||| ||||| || || ||| | || |||||||| || ||||| || ||| | Sbjct 5786 ATGTGCGCCTGGAATCCTAAAGATATTCCCCTGATGGCTCTTCCCCCTTGTCACTGTTTG 5727 Query 34604 TGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 ||||| || || || ||||| || || || || || | ||||||||||| | ||| Sbjct 5726 GCTCAATTTTATGTTGCCAATGGTGAACTATCTTGTCAATTATATCAACGATCTGCAGAT 5667 Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 ||||| ||||| || || || ||||| || ||||| |||| | ||| ||| | || Sbjct 5666 ATGGGATTAGGAGTACCTTTTAACATAGCAAGTTATTCTCTCTTAACGATTATGTTGGCC 5607 Query 34724 CATGT 34728 ||||| Sbjct 5606 CATGT 5602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447796403218800