Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq66674 100 2e-16 seq20317 93.3 3e-14 >seq66674 Length=28361 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| || ||||| || ||||| ||| || || |||| || ||| | Sbjct 27648 AATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAAGCTTC 27589 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 || | || || || || ||||| |||||||||||| |||| || || Sbjct 27588 TGATACTATAGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCA 27529 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || || ||||| || |||||||| || || | ||| | || || || || || Sbjct 27528 GCAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGACGTACTTTATCAGACTATAA 27469 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||| ||||||||| ||| |||||||| ||||| Sbjct 27468 CATTCAAAAAGAGTCCACGTTGCATTTAGTTTT 27436 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| ||||| |||||||| ||| || || |||| |||||| | Sbjct 27876 AATGCAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 27817 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||||| ||||| |||||| |||| || Sbjct 27816 TGATACTATTGAAAAT--GTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGAT 27759 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 || ||||| ||||| ||||| || ||||||||||| || | | | | |||| || ||||| Sbjct 27758 CAACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTT-TCAGATTA 27700 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||||| ||||| || ||| | ||||| ||||| Sbjct 27699 TAACATTCAAAAGGAATCTACTCTTCATTTAGTTTT 27664 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || ||||| || ||||| ||| || || |||| || || | | Sbjct 27419 ATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCT 27360 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| ||||| || || |||| || | Sbjct 27359 GATACCATTGAGAAT--GTTAAAGCCAAAATTCAAGACAAGGAGGGCATTCCTCCAGATC 27302 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || ||||| || ||||||||||| || | ||||| || |||||||| | Sbjct 27301 AGCAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTATA 27242 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| || | || ||||||||||| | ||||| || Sbjct 27241 ACATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGCCTTCGTGGTGG 27193 >seq20317 Length=5186 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| |||||||||||||| || || ||| || ||| |||| || ||| || Sbjct 899 ATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACCATCACACTTGAAGTGGAAGCTTCA 840 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||||| | ||| ||||| || || || || ||||| | || || | Sbjct 839 GACACGATTGAAAAT--GTCAAGACCAAGATCCAGGATAAGGAAGGAATCCCCCCAGATC 782 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || ||||| ||||| |||||||| || | ||| | |||||||| |||| Sbjct 781 AGCAACGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACATTGTCCGACTACA 722 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || |||| | || || || || | ||| | || || Sbjct 721 ACATTCAAAAGGAATCCACTCTCCACTTAGTCCTGAGGTTGAGAGGAGG 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355501707323955