Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq66674 181 7e-41 seq42503 152 3e-32 seq20317 149 4e-31 seq17180 102 6e-17 seq12343 87.8 1e-12 >seq66674 Length=28361 Score = 181 bits (200), Expect = 7e-41 Identities = 172/217 (79%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| | | Sbjct 27648 AATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAAGCTTC 27589 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | |||| | |||| | |||| || |||||||||||| | || ||||||| Sbjct 27588 TGATACTATAGAAAATGTTAAGGCTAAAA-TTCAAGACAAAGAAGGTATTCCTCCAGATC 27530 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||||| || ||||| || |||||| | || || | ||| |||||| || || | Sbjct 27529 AGCAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGACGTACTTTATCAGACTATA 27470 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| |||||||||||||| || |||||||||||||| Sbjct 27469 ACATTCAAAAAGAGTCCACGTTGCATTTAGTTTTAAG 27433 Score = 170 bits (188), Expect = 1e-37 Identities = 167/213 (78%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || | Sbjct 27419 ATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCT 27360 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| ||||| | |||||| ||||| || || | || |||||||| Sbjct 27359 GATACCATTGAGAATGTTAAAGC-CAAAATTCAAGACAAGGAGGGCATTCCTCCAGATCA 27301 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || ||||| || |||||| ||||||| | |||||||||| |||||| || Sbjct 27300 GCAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTATAA 27241 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| |||||||| || || | || || ||||| Sbjct 27240 CATTCAAAAAGAATCTACCCTTCACTTGGTTTT 27208 Score = 159 bits (176), Expect = 2e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || |||||||| || || ||||| |||||||| ||||| || | | Sbjct 27876 AATGCAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 27817 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||||| | ||||| | |||| || ||||| |||||| | || ||||||| Sbjct 27816 TGATACTATTGAAAATGTTAAAGCTAAAA-TTCAAGACAAGGAAGGTATTCCCCCAGATC 27758 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| |||||||| ||||| || |||||| ||||||| | | | || | ||||| | Sbjct 27757 AACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTTTCAGATTATA 27698 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| ||||| || || || | |||||||||||||| ||| |||| ||| Sbjct 27697 ACATTCAAAAGGAATCTACTCTTCATTTAGTTTTAAGATTGAGAGGTGGA 27648 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || ||||| ||| | || || ||||| |||||||| ||||| || | | Sbjct 28104 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 28045 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||||| | ||||| | || | | || || |||||| | || ||||||| Sbjct 28044 AGACACAATTGAAAATGTTAAAGCCAAGA-TCCAAGATAAGGAAGGTATTCCCCCAGATC 27986 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| |||||||| ||||| || |||||| ||||||| | | | || | ||||| | Sbjct 27985 AACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCCTTTCAGATTATA 27926 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || ||||| || ||||| | |||||||| || || ||| |||| ||| Sbjct 27925 ATATTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGTGGA 27876 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| |||||||| || || |||||||| ||||| || ||||| || | | Sbjct 28332 AATGCAGATTTTTGTTAAAACTCTGACTGGAAAAACCATCACACTTGAAGTGGAAGCTTC 28273 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || |||||| || || |||||| | || ||||| || Sbjct 28272 AGACACAATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCA 28213 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| ||||| || ||||| || |||||| | || || | | | |||||| ||||| Sbjct 28212 ACAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTT--CAGATTAT 28155 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| ||||| |||||||| | || | || | || || |||||||| Sbjct 28154 AACATCCAAAAGGAGTCCACCCTTCACCTGGTCCTCAGATTAAGAGGAGGA 28104 >seq42503 Length=950 Score = 152 bits (168), Expect = 3e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||||||||||||||| |||||||| ||||| || |||||||| || | Sbjct 639 AATGCAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTC 580 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || |||||| || || ||||| | || |||||||| Sbjct 579 AGACACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 520 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || |||||||| ||||| ||| | ||||| | | | ||| | ||||||||| Sbjct 519 GCAAAGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAA 460 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || ||||| || | || || ||| | || ||| |||||||| Sbjct 459 TATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCAGATTGAGAGGAGGA 411 Score = 138 bits (152), Expect = 8e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || ||||| ||| | || || ||||| |||||||| ||||| || | | Sbjct 867 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 808 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||||| | ||||| | || | | || || |||||| | || ||||||| Sbjct 807 AGACACAATTGAAAATGTTAAAGCCAAGA-TCCAAGATAAGGAAGGTATTCCCCCAGATC 749 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| |||||||| ||||| || |||||| ||||||| | | | || | ||||| | Sbjct 748 AACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACNCTTTCAGATTATA 689 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || ||||| || ||||| | |||||||| || || ||| |||||||| Sbjct 688 ATATTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGAGGA 639 >seq20317 Length=5186 Score = 149 bits (164), Expect = 4e-31 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| |||||||| ||||| |||||||| |||||||| ||||| || | | Sbjct 444 AATGCAGATTTTTGTTAAAACTCTCACTGGAAAAACAATCACTCTTGAAGTGGAAGCTTC 385 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || ||||| || || ||||| | || |||||||| Sbjct 384 AGACACTATTGAAAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 325 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || |||||| | ||||| | ||| |||||| || || || Sbjct 324 GCAGAGATTGATTTTTGCTGGYAAACAATTAGAAGATGGACGTACTTTATCAGACTATAA 265 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| ||||| || | ||||| || | || ||| |||||||| Sbjct 264 CATTCAAAAGGAGTCGACCCTTCATTTGGTCCTTAGATTGAGAGGAGGA 216 Score = 127 bits (140), Expect = 1e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || ||||| ||| | || || ||||| |||||||| ||||| || | | Sbjct 216 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 157 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||||| | ||||| | || | | || || |||||| | || ||||||| Sbjct 156 AGACACAATTGAAAATGTTAAAGCCAAGA-TCCAAGATAAGGAAGGTATTCCCCCAGATC 98 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| |||||||| ||||| || |||||| ||||||| | | | ||| | ||||| | Sbjct 97 AACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCAGATTATA 38 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | || ||||| || ||||| | |||||||| || || Sbjct 37 ATATTCAAAAGGAATCCACTCTTCATTTAGTATTGAG 1 >seq17180 Length=12851 Score = 102 bits (112), Expect = 6e-17 Identities = 141/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| ||||| || || || || ||||| || | Sbjct 3932 ATGCAGATTTTCGTGAAGACCCTCACGGGTAAAACTATTACCCTTGAGGTTGAGGCCTCA 3991 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | | |||| |||| || ||||| || || || || | || |||||||| Sbjct 3992 GATACTATCGAAAATGTTAAGAC-CAAAATCCAGGATAAGGAGGGAATTCCTCCAGATCA 4050 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 || ||||| || ||||| || || ||| | || || | || | |||| | || ||| Sbjct 4051 GCAACGTTTGATCTTTGCGGGAAAGCAATTAGAGGATGGCCGTACCCTTTCG--GACTAC 4108 Query 23788 AACATACAAAAAG 23800 ||||| ||||||| Sbjct 4109 AACATTCAAAAAG 4121 >seq12343 Length=6788 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 13/214 (6%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC-AC 23669 |||||||||||||| || ||||| |||| ||||| || || || || ||||| || | Sbjct 2377 ATGCAGATTTTCGTAAAGACCCTTGCGGGTAAAACTATTACCCTTGAGGTTGAGGCCTAT 2318 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC---AGA 23726 || |||| ||||||| |||||| || || || || |||| || ||| Sbjct 2317 CGA--------AAATGTTAAAAC-AAAAATCAAGGATAAGGAGGGAATACCTCCTCTAGA 2267 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || ||||| || |||| || |||||| | || || | || ||| | || || Sbjct 2266 TCAGCAACGTTTGATCTTTGTTGGAAAACAATTAGAGGATGGTCGTACTCTTTTGGACTA 2207 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| ||||||| ||||| | ||||| ||| Sbjct 2206 CAACATTAAAAAAGAATCCACTCTTCATTTGGTT 2173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337667002447820