Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq62093 163 7e-35 seq66674 149 1e-30 seq20317 149 1e-30 seq65606 140 8e-28 seq65604 140 8e-28 seq42503 140 8e-28 seq81806 91.5 4e-13 >seq62093 Length=56387 Score = 163 bits (180), Expect = 7e-35 Identities = 152/193 (79%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | || ||||| | |||||| || |||||||| |||||||| ||||| |||| Sbjct 3528 CTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAGA 3587 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | || ||||| || || || ||||| |||||||| || |||||||| ||||||| || Sbjct 3588 TGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACATTTT 3647 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 ||||||| ||||| | ||| || || | || || |||||||||||||||||||| | || Sbjct 3648 CGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACGA 3707 Query 225704 ACACTTGCATTTT 225716 | | |||||| || Sbjct 3708 AGATTTGCATCTT 3720 >seq66674 Length=28361 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| ||||| || ||||| || ||||||| || ||||| | | ||||| || Sbjct 28116 TCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCC 28175 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| |||| || || ||||| ||||| | ||||||||||| || |||||||||||||| Sbjct 28176 ATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTT 28235 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || ||| ||| ||| || |||||||| | |||||| || | ||||| Sbjct 28236 ATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCACTTCAAGTGTGAT 28295 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || |||| |||||| | || | |||||| Sbjct 28296 GGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCATT 28332 Score = 134 bits (148), Expect = 3e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || ||||||||||| ||||| | ||| ||||| | | ||||| || Sbjct 27888 TCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGGGTTCTTCC 27947 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| ||||| | |||||||| || || |||||||||||||| Sbjct 27948 ATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTT 28007 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| || ||| ||| || |||||||| | ||| || || | ||||| Sbjct 28008 ATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGAT 28067 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || || || | || | ||||||| Sbjct 28068 TGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 28104 Score = 114 bits (126), Expect = 3e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| ||||| ||||| | || ||||| | | ||||| |||||||| | || Sbjct 27673 TGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAAAGCGTTCTTCCATCTTCCAATTGT 27732 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | |||||||| || || |||||||||||||||||||| || ||| Sbjct 27733 TTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGAAT-TTT 27791 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||| ||| || || || || | ||| || || | ||||| || || || || Sbjct 27792 AGCTTTAACATTTTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATTGTTTTACCAGT 27851 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | ||||| | || | ||||||| Sbjct 27852 AAGGGTTTTGACAAAGATTTGCATT 27876 Score = 111 bits (122), Expect = 4e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || ||||||||||| | || ||||||| ||||| Sbjct 27198 ACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGT 27257 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||| ||||| | ||||| || || || ||||| || Sbjct 27258 GCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCC 27317 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||| || ||| || || ||| || ||||| || |||| || || || | Sbjct 27318 CTCCTTGTCTTGAAT-TTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAA 27376 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | ||||| | ||| | ||||| Sbjct 27377 GAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||| |||||||| | || || || | ||||| | ||||| |||| || || ||| Sbjct 27451 GTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCCTCTAATTGTTTACCA 27510 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | ||||| || || || ||||||||||| |||||||| || || ||| Sbjct 27511 GCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTTAGCCTTA 27570 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| || || || || | ||| || || | ||||| || || || || | ||| Sbjct 27571 ACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGATTGTTTTACCAGTGAGTGTT 27630 Query 225697 TTTATGAACACTTGCATT 225714 || | ||| | |||||| Sbjct 27631 TTAACGAAAATCTGCATT 27648 >seq20317 Length=5186 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||||||| | ||||||||||||||| ||||| | ||||| |||| ||| || | ||| Sbjct 685 CTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGTCCA 744 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || | ||||| ||||| ||||| | ||||| || || || || || |||||||| Sbjct 745 TCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTA 804 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||| ||| ||| ||| || |||||||| | |||||| || | ||||| Sbjct 805 TCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGTGTGATG 864 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| | |||||| | || | |||||| Sbjct 865 GTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| ||||||| ||||| || | |||||| | |||||||| | |||| Sbjct 469 TGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGACAAAGTACGTCCATCTTCCAACTGC 528 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| |||| || || || || ||||| |||||||| ||||| ||||| Sbjct 529 TTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGGGAATTCCTTCCTTATCTTGAATCTTG 588 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || ||| ||||| ||||||| ||| || || | ||| || ||||| || ||| Sbjct 589 GCCTTAACGTTTTCAATGGTATCTGAGGGTTCAACCTCGAGCGTAATGGTCTTTCCAGTC 648 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 |||||||| | || | |||||| Sbjct 649 AAAGTTTTGACAAAGATCTGCATT 672 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||||||||| ||||| | ||| ||||| | | |||||| |||||||| | || Sbjct 13 TGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATCTTCCAATTGT 72 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | |||||||| || || |||||||||||||| ||||||||||| Sbjct 73 TTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTG 132 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| ||| || |||||||| | ||| || || | ||||| || || || || Sbjct 133 GCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGTTTTACCGGTT 192 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 || || || | || | ||||||| Sbjct 193 AAGGTCTTAACAAAGATTTGCATT 216 >seq65606 Length=3149 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||| || | ||| | | ||| ||||||| |||||| || |||||| Sbjct 2293 AGGACGATGTGAAGACCAGACTGTTTCTAAATATTATAATCGGACAAAGTCCTTCCATCT 2352 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||| ||||| ||||| | | ||| || || || ||||| |||||||| ||| Sbjct 2353 TCAAGCTGCTGGCCAGCAAAGATGCGACATTGCTGATCTGGAGGAATTCCTTCCTTATCT 2412 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||| ||| |||||| ||||||||| ||||| | ||| | || | | ||| ||| Sbjct 2413 TGGAGCTTAGTTTTCACATTTTCGATGGTATCTGAAGGTTCGGCCTCAAGGGAGATGGTC 2472 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||||||||||||||| Sbjct 2473 TTGCCCGTCAAAGTTTT 2489 >seq65604 Length=3149 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||| || | ||| | | ||| ||||||| |||||| || |||||| Sbjct 857 AGGACGATGTGAAGACCAGACTGTTTCTAAATATTATAATCGGACAAAGTCCTTCCATCT 798 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||| ||||| ||||| | | ||| || || || ||||| |||||||| ||| Sbjct 797 TCAAGCTGCTGGCCAGCAAAGATGCGACATTGCTGATCTGGAGGAATTCCTTCCTTATCT 738 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||| ||| |||||| ||||||||| ||||| | ||| | || | | ||| ||| Sbjct 737 TGGAGCTTAGTTTTCACATTTTCGATGGTATCTGAAGGTTCGGCCTCAAGGGAGATGGTC 678 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||||||||||||||| Sbjct 677 TTGCCCGTCAAAGTTTT 661 >seq42503 Length=950 Score = 140 bits (154), Expect = 8e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| || || || || || |||| ||||||||||| | |||||| || Sbjct 423 TCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAAAGAGTTCTTCC 482 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| ||||| || || | || ||| || || || ||||| |||||||| Sbjct 483 ATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTT 542 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || ||| ||| ||| ||||||||||||| ||| || || | ||||| Sbjct 543 ATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACTTCAAGTGTGAT 602 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || | ||||| | ||| | |||||| Sbjct 603 GGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCATT 639 Score = 136 bits (150), Expect = 9e-27 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || ||||||||||| ||||| | ||| ||||| | | ||||| || Sbjct 651 TCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGNGTTCTTCC 710 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| ||||| | |||||||| || || |||||||||||||| Sbjct 711 ATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTT 770 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| || ||| ||| || |||||||| | ||| || || | ||||| Sbjct 771 ATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGAT 830 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || || || | || | ||||||| Sbjct 831 TGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 867 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | ||| || ||||| || ||||||| || ||||| | | ||||| || Sbjct 195 TCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCC 254 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| |||| || || ||||| ||||| | ||||||||||| || |||||||||||||| Sbjct 255 ATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTT 314 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || ||| ||| || || || || || | ||| || || | ||||| Sbjct 315 ATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGAT 374 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || || || | || | ||||||| Sbjct 375 AGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCATT 411 >seq81806 Length=43110 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| |||||||| || ||||| || || || || ||||||||||| |||||||| Sbjct 7335 GAAAATTTGCCCATCAGTGATGGAGATGACGTTAGTTGGAATATAAGCAGATACATCACC 7276 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| || || | ||| || | || || || ||||||||||| Sbjct 7275 AGCTTGCGTCTCAATAACTGGGAGAGCGGTAAGAGATCCACCACC 7231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191260496516510