Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq27661 158 1e-33 >seq27661 Length=34041 Score = 158 bits (174), Expect = 1e-33 Identities = 229/323 (71%), Gaps = 3/323 (1%) Strand=Plus/Minus Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 || ||||||||||| |||| |||||||| || || || || || || ||||| ||| Sbjct 21799 ATGTAAGTGTCTATAAGTAATGAGTACATTTCGGAGTGAATGTTCTCGATTGCAATTTGA 21740 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937 || ||||| || ||||| || || || || || ||||| | |||||| || || | | Sbjct 21739 AACCCGTAGAAACATCTCGCCTCCGTAACCTGTACTTCCTGTGTAAATCTCTCCACAATG 21680 Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 || ||||| || || ||||| || || ||||| |||||||| | |||||||||||| Sbjct 21679 TTCTCGTTCACAATTCCGTCCGACGCAGCGAAAAATGCCAAAACTCGTGATATAAAGTAC 21620 Query 4998 TGTTCGTCAGGCTTAAGTTT---TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCT 5054 |||| ||| || | ||| | ||||| | ||| || || | | || ||||| Sbjct 21619 CGTTCCTCATCATTCAATTTCTCCTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACTTCC 21560 Query 5055 TCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGA 5114 || ||||||||||| ||| | || || || ||||| |||||||||| ||| | Sbjct 21559 TCCACAGTCCAAAAGCTTGCTACGGCCTTCTTATACATGTTCCAAATATCAAAATATTCG 21500 Query 5115 ATCGGAAGTATGACAAATCTGTT 5137 || ||||| || || ||||| || Sbjct 21499 ATAGGAAGGATTACGAATCTATT 21477 Score = 158 bits (174), Expect = 1e-33 Identities = 285/415 (69%), Gaps = 4/415 (1%) Strand=Plus/Minus Query 4278 TTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTA 4337 ||||| || ||||| ||||| || || | ||||||||||||||||||||||| ||||| Sbjct 22410 TTTTCAAAAAAATTGGTTTTACCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTC 22351 Query 4338 GTTGCGTT--GTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATT 4395 | ||| |||| ||| ||| || || ||||||| | || || || ||||||| Sbjct 22350 --TCAGTTAGGTAAATTTTCGGACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATT 22293 Query 4396 CTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATG 4455 ||||| || |||| || ||||| ||||| | | || || || || || | | Sbjct 22292 TAATATATTGCACCATGGAATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAG 22233 Query 4456 TCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAG 4515 | | ||| || ||| || | || || || || || || || | | | Sbjct 22232 TTAGAAATTCACTTTCAATCGCAACAGCCTCACGAATAATTTCGACAATACGAGCCACGG 22173 Query 4516 ATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGT 4575 |||| |||| | | || || ||||| | ||| |||||||| |||||| || |||| Sbjct 22172 ATGGCTTATGAGCAAGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGT 22113 Query 4576 CTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCC 4635 |||| || |||||||| ||||| || | |||||||| | || | || || | || Sbjct 22112 CTCTAGATATAAGTTCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACC 22053 Query 4636 AAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 | ||||| | ||||||||||| |||||||| ||||| || ||||| ||||| || Sbjct 22052 AGAATATGGAAGCAAATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGC 21998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426616753868945