Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq46208 107 1e-18 >seq46208 Length=8390 Score = 107 bits (118), Expect = 1e-18 Identities = 322/497 (65%), Gaps = 0/497 (0%) Strand=Plus/Plus Query 27162 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 27221 ||| ||||| || || || | ||| || | || || || |||| || ||| || || Sbjct 5547 GTATACGTGTGCATCACCTAAGGTATGAATGAATTCACCAGGTTTGAGATTGGTCACATG 5606 Query 27222 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 27281 |||| ||| ||| | |||||| || || || |||||||| ||||| || | ||||| Sbjct 5607 GGCCAACATAATCGTTAAGAGAGAATAACTTGCTATGTTAAAAGGTACTCCTAATCCCAT 5666 Query 27282 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACA 27341 || | || | || || | ||||| || || || |||| | || ||||| ||| Sbjct 5667 ATCTGCAGATCGTTGATATAATTGACAAGATAGTTCACCATTGGCAACATAAAATTGAGC 5726 Query 27342 TATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 27401 | ||| || || ||||||||||| ||| | ||||| || ||||||||||||| Sbjct 5727 CAAACAGTGACAAGGGGGAAGAGCCATCAGGGGAATATCTTTAGGATTCCAGGCGCACAT 5786 Query 27402 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 27461 | || || | || | |||||| | | || | | | | ||||| || Sbjct 5787 TAATATACGACGATCGTTTGGGTTATCTTTTATAGTCTTGATAACATGAGAAAGCTGGTC 5846 Query 27462 CACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 27521 || || |||| |||||| ||| | |||| || ||||| |||| | ||| Sbjct 5847 AACTCCTTTCCCTTGGTAGTCAGTGTGCATATTATTGTATTCCGCTCCATAATGACGCCA 5906 Query 27522 TTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 27581 |||||| || || || || || || ||||||||||| |||| || ||| | || Sbjct 5907 TTGGAATCCATATACTGGACCGAGATCTCCCTCTTCTCTGTTGGTAAATCCCATAGAATC 5966 Query 27582 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641 ||||| || || || ||| | ||||| ||| | ||| || || ||||| || Sbjct 5967 TAAAAATTCCCTTGAGGAGTTTCCATCCCATATCCTCACCTTTTTTTCCTTAAGCTCATT 6026 Query 27642 GGAGTTTGTGGACCCTC 27658 | ||||| || |||| Sbjct 6027 TGCATTTGTTGATCCTC 6043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369132677317115