Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq58440 260 2e-64 seq27661 219 6e-52 seq4608 87.8 2e-12 >seq58440 Length=15377 Score = 260 bits (288), Expect = 2e-64 Identities = 469/680 (69%), Gaps = 18/680 (3%) Strand=Plus/Minus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 || |||| ||| |||||||| | | || || | ||| ||||| ||||| ||||| || Sbjct 6368 TTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCT 6309 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||| | || || |||| ||||||||||||||| ||| ||||| || |||| Sbjct 6308 GTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGC 6249 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 | || ||||| || |||| || ||||||||||| || ||||| || | |||||| ||| Sbjct 6248 TGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCC 6189 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 |||| | | |||||||||| ||||||||| | ||||| ||| | || ||||| Sbjct 6188 ATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCG 6129 Query 77013 TCTGGAAGGTTTG-----TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTA 77067 || |||| |||| ||||||| | ||| ||| ||| | ||||| | | || | Sbjct 6128 TCAGGAA--TTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTTTCA 6071 Query 77068 TATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTT 77127 | || |||| ||| | | | | || || || |||| | | ||| |||| || |||| Sbjct 6070 TTTCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAATTT 6011 Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187 ||||||| || || || || | | | ||||||||| || |||| || | || Sbjct 6010 GAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTCCTT 5951 Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247 ||||||| || | ||||| || || || || |||||||| || | || || || | Sbjct 5950 CATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAG-CAAGAAGAAGGGAA 5892 Query 77248 TTCTG-AGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 ||| | | || | | | ||||| | |||| | | ||||||||| | || || Sbjct 5891 TTCCGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCCCACATATTTGTG 5832 Query 77307 GG---TACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363 || ||| | ||||||||||| ||||||| | || | ||| | ||||| ||| Sbjct 5831 GGGGTAACACCTTCCCAAAGATCAAATTGTAGCAACCCTTGACTTACTGGAGATCCTTTA 5772 Query 77364 TATGTTTCATAAGGTCC---TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 ||||| || || | ||| ||| | |||||||||||||||||||||| || || ||| Sbjct 5771 TATGTCTCGTATGTTCCCAATTCAG---CAGCTAGTTCACAACTCGCTTCTAAGGCACCG 5715 Query 77421 TAATAAATTGTTTCGAAAAT 77440 || ||||| ||||| || || Sbjct 5714 TAGTAAATAGTTTCAAATAT 5695 Score = 250 bits (276), Expect = 3e-61 Identities = 585/879 (67%), Gaps = 3/879 (0%) Strand=Plus/Minus Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 ||||| || ||| |||||||||| |||| ||||| ||||| |||| || | ||| || Sbjct 5280 ATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGATT 5221 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 || |||||| |||||||| || | || | |||||||| |||||||| || || Sbjct 5220 AGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTTGCGA 5161 Query 77843 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCT 77902 ||| || || | | ||| || ||| || | || || | || Sbjct 5160 TTCAATGATGGCCTCCCACACTTTATGAGCAGGTACCTGCCGCCTGAATTTGTTTTCATC 5101 Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 ||||||| | |||||| ||||| || || |||||||||||||| || || || || Sbjct 5100 CTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCCTGGACA 5041 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||||| || ||||| | ||| |||||| || | ||||||||||| || | ||| Sbjct 5040 TTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAATAAATC 4981 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 ||| ||||| |||||| |||| ||| | | || || |||||| || ||||| || Sbjct 4980 AGGAATCCAAAGAGCATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTTTT 4921 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142 || || ||||| || | || ||| | |||||| ||||||| ||| ||||| | | Sbjct 4920 ACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAATTGCAAATGC 4861 Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202 ||||| | ||| ||||| || || || | |||| | || || |||||| |||||| | Sbjct 4860 GCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAAAACTCGAAG 4801 Query 78203 CATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCG 78262 ||| || | ||| || ||||| |||||| || || | ||||||| || |||| || Sbjct 4800 CATGGGTACAATCCCATTAGAGTATCCATTGGTCCCCGCAATATAAGAACCTTTTGCTCG 4741 Query 78263 AATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTT 78322 |||| | ||| || || || ||||| || || || || | || |||| Sbjct 4740 AATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAATTGCAGTTTGTTT 4681 Query 78323 CAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAG 78381 || ||||| || || || || || |||| ||| ||||| || ||| ||||| | Sbjct 4680 CAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAATAA-AAAGCAGCTTG 4622 Query 78382 ACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATT 78441 | | |||| | | || | ||||| || | ||| ||||| ||||| || || | Sbjct 4621 ATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAAATACC 4562 Query 78442 TTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTA 78501 || ||| || || ||||| || | || | ||| || || | ||||| |||| Sbjct 4561 CTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCCGTGAATACCTA 4502 Query 78502 CCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACA 78561 | | || | ||||| |||||| || || ||||||||| || || ||||| | | Sbjct 4501 CAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTTGCCAATTTTGAGTA 4442 Query 78562 AGTATGATTTTTCCAAAGTTTTAAAAC-CAAAATAGTTG 78599 |||| | ||| | |||||| || | |||| ||||| Sbjct 4441 AGTAGCTTCGTTCTAGAGTTTTGAACCTGAAAAGAGTTG 4403 >seq27661 Length=34041 Score = 219 bits (242), Expect = 6e-52 Identities = 373/527 (71%), Gaps = 24/527 (5%) Strand=Plus/Minus Query 47830 CTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTT 47889 |||| |||||||| ||| ||||||||||| || || ||| || |||||||| |||| Sbjct 22450 CTTG-GACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTT 22392 Query 47890 TGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTA--TAAAtttt 47947 | || || | ||| |||||||||||||||||||| ||||| | | ||| |||||||| Sbjct 22391 TACCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAG--TTAGGTAAATTTT 22334 Query 47948 tttA-AATCCTAAT-TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATC 48005 | ||| ||| ||| || |||||||||||||| |||| |||||| | || | Sbjct 22333 CGGACAAT--TAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATAT---TGCACC 22279 Query 48006 ATT---TCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGT 48062 || ||||| |||||||| | | | ||| || || ||||| || ||||| || | Sbjct 22278 ATGGAATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTT 22219 Query 48063 TCGATAGTGACAGCATCC--ACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACA 48120 || || | ||||| || | || | |||| ||| || | ||| || | Sbjct 22218 TCAATCGCAACAGCCTCACGAATAATTTCGACAATACGAG--CCACGGATGGCTTATG-A 22162 Query 48121 ACAAA-TGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATT 48179 ||| ||| ||||||| | ||| |||||||| ||| | || || |||||| || Sbjct 22161 GCAAGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATA 22102 Query 48180 AATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCC 48239 | |||||| ||||| |||||||||||||| ||||||||||| || | ||| ||||| | Sbjct 22101 AGTTCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAA 22042 Query 48240 GCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCG 48299 || || || || |||||||| ||||| || ||||| ||||| || ||| || |||||| Sbjct 22041 GCAAATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCCG 21982 Query 48300 TAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTT 48343 | ||| || | ||| |||| ||||||||||| | ||| || Sbjct 21981 AAGGAGGCGGATTGGGACTGTGTCCAGCGTTGTGCCCATTGAGCTTT 21935 Score = 127 bits (140), Expect = 3e-24 Identities = 234/339 (69%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 48400 TATCTTTAACGTAAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAAT 48457 || ||||| |||||| ||||| | || || || ||||||||||||||| || || || Sbjct 21806 TACCTTTAT-GTAAGTGTCTATAAGTAATGAGTA--CATTTCGGAGTGAATGTTCTCGAT 21750 Query 48458 TGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCG 48517 ||| || ||||| ||||| ||||||||||| || || | |||||| ||| ||||| Sbjct 21749 TGCAATTTGAAACCCGTAGAAACATCTCGCCTCCGTAACCTGTACTTCCTGTGTAAATCT 21690 Query 48518 TTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTT 48577 || | | ||||| || || ||||| || ||||| |||||||| || || || Sbjct 21689 CTCCACAATGTTCTCGTTCACAATTCCGTCCGACGCAGCGAAAAATGCCAAAACTCGTGA 21630 Query 48578 AATAAAATATTTTTCGTTGGAAGTCAGTTT---ATTCCAGTCATTGATATCTTTTGATAT 48634 ||||| || ||| | | ||| ||| | |||||| | | || || | Sbjct 21629 TATAAAGTACCGTTCCTCATCATTCAATTTCTCCTCCCAGTCGATCAAGTCCTTGCTGAG 21570 Query 48635 ATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 || ||||| || | |||||||| ||| | || || |||||||| ||||| ||||| Sbjct 21569 GTCCACTTCCTCCACAGTCCAAAAGCTTGCTACGGCCTTCTTATACATGTTCCAAATATC 21510 Query 48695 ACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 | |||| ||| || | || || |||||||| ||||| Sbjct 21509 AAAATATTCGATAGGAAGGATTACGAATCTATTAGGATT 21471 >seq4608 Length=17199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 171474 AAGATGTACTAACGAGAAAACTAGAAGGTTTGGTTTTAAAGGATATTAATGGTATGTACG 171533 ||||||| || | || | || ||||| ||||| | || ||||| ||| || || | Sbjct 12447 AAGATGTTCTTAAGAAAGGTCTGGAAGGATTGGTACTCAAAGATATCAATTCTACTTATG 12388 Query 171534 AGCCCGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAACGAGGGTTCGATGG 171593 |||| || || || |||||||| | || | ||| || ||||| || || | |||| Sbjct 12387 AGCCGGGGAAGCGACATTGGCTTAAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGG 12328 Query 171594 CGGATTCTGCAGATCTAGTAGTATTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAA 171653 | ||| |||| || | || || ||||| | || | ||| | |||| ||||||||| | Sbjct 12327 CAGATACTGCTGACTTGGTTGTTTTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGA 12268 Query 171654 TGATG-GCAGTCTTTTTGATGGGCTGTTATGA 171684 | || ||| | ||||||||||| || || || Sbjct 12267 TCGTGAGCA-TATTTTTGATGGGTTGCTACGA 12237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693946648365600