Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq58440 253 3e-62 seq27661 188 1e-42 seq4608 127 3e-24 >seq58440 Length=15377 Score = 253 bits (280), Expect = 3e-62 Identities = 465/677 (69%), Gaps = 12/677 (2%) Strand=Plus/Minus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 || |||| ||||||||||||| | | |||| ||| ||||| ||||| ||||| || Sbjct 6368 TTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCT 6309 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| | || || |||| ||||||||||||||| ||| ||||| || | || Sbjct 6308 GTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGC 6249 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 | || ||||| || |||| || ||||||||||| || ||||| || | |||||| ||| Sbjct 6248 TGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCC 6189 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607 |||| | | |||||||||| ||||||||| | ||||| ||| | || ||||| Sbjct 6188 ATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCG 6129 Query 75608 TCTGGAAGATTTG-----TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGA 75662 || ||| ||||| ||||||| | |||||| ||| | ||||| | | || | Sbjct 6128 TCAGGA--ATTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTTTCA 6071 Query 75663 TCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTT 75722 | || |||| ||| | | | || || || |||| | | ||| |||| ||||||| Sbjct 6070 TTTCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAATTT 6011 Query 75723 GAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 75782 ||||||| || || || || | || | ||||||||| || |||| || | || Sbjct 6010 GAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTCCTT 5951 Query 75783 CATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTAT 75842 ||||||| || | ||||| || || || || || ||||| || | || || || | Sbjct 5950 CATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAG-CAAGAAGAAGGGAA 5892 Query 75843 TTCTG-AGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 ||| | | || | | | ||||| | |||| | | ||||||||| | || || Sbjct 5891 TTCCGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCCCACATATTTGTG 5832 Query 75902 GG---TACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTA 75958 || ||| | ||||| ||||| ||||||| | || | || | ||||| ||| Sbjct 5831 GGGGTAACACCTTCCCAAAGATCAAATTGTAGCAACCCTTGACTTACTGGAGATCCTTTA 5772 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 ||||| ||||| || || | |||||||||| |||||||| ||||| |||||||| Sbjct 5771 TATGTCTCGTATGTTCCCAATTCAGCAGCTAGTTCACAACTCGCTTCTAAGGCACCGTAG 5712 Query 76019 TAAATTGTTTCGAAAAT 76035 ||||| ||||| || || Sbjct 5711 TAAATAGTTTCAAATAT 5695 Score = 223 bits (246), Expect = 5e-53 Identities = 422/616 (69%), Gaps = 4/616 (1%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| || || |||||||||||||| || || |||||||||| |||||||| | | Sbjct 5078 TCAAAATCTTCACCCCAAACATCATCTAACCCTGGACATTCATGAGGACACATAAGGCTC 5019 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || |||||| || | || |||||||| || | |||||| ||||| |||||| ||| Sbjct 5018 CAAATACCATCCTCTTCCACTCGTTTCATGAATAAATCAGGAATCCAAAGAGCATAGAAT 4959 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | ||| | | || | |||||| || ||||| || || ||||| || || | | Sbjct 4958 AAATCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTTTTACGTAGTTCTAGAAAATCAAAA 4899 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | ||| | |||||| ||||||| ||| || || | | || || | ||| ||||| || Sbjct 4898 ACATCCGCATGCCAAGGTTCTAAATAAATTGCAAATGCGCCAGGCCTTTTGTTACCACCT 4839 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | |||| | || || |||||| |||||| | ||| || | ||| || ||||| Sbjct 4838 TGGTCAACATATTTCGCCGTATTATTAAAAACTCGAAGCATGGGTACAATCCCATTAGA- 4780 Query 76820 GTA-CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCC 76878 ||| ||||| || || | ||||||| || ||| |||||| | |||| | || Sbjct 4779 GTATCCATTGGTCCCCGCAATATAAGAACCTTTTGCTCGAATACAATGAATATTAATACC 4720 Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTC 76938 || ||||| || ||| || || | ||| |||||| || ||||| ||||| || Sbjct 4719 GATCCCTCCAGCGGATTTTGAAATAATTGCAGTTTGTTTCAGAGTATCATAAATGCCTTC 4660 Query 76939 TATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997 || ||| ||| ||||| || ||| ||||| || | |||| | | || Sbjct 4659 AATGGAGTCAGAGGACATCGTTAATAA-AAAGCAGCTTGATAATTGAGGTTTTGGTGTAG 4601 Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057 | ||||| || | ||| ||||| ||||| ||||| | || ||| || || ||||| | Sbjct 4600 CAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAAATACCCTTGAGAGAGAAGGTTGTAGG 4541 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 | | || || |||| ||||| | ||||| ||||||| ||| | ||||| ||||| Sbjct 4540 TCTTGATCACACCTTCAATATCTTCTCCGTGAATACCTACAGAGACTCTCATCAGCATAT 4481 Query 77118 GCTGAGGTCGTTCTAC 77133 | || || | ||| || Sbjct 4480 GTTGTGGCCTTTCAAC 4465 Score = 114 bits (126), Expect = 2e-20 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 |||||||| ||||||||||| ||||| || ||||| ||||| || | |||||| |||| Sbjct 5574 AGAATAAAAGCATCTGCTAGACCCTGTACACCAATTCCAATTGGACGGTGTCTCATATTA 5515 Query 76145 GAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTG 76204 || | |||||| | ||||| |||| ||||| ||| || |||||||| | ||| | Sbjct 5514 GATCTGCGAGCTTCCTGGATAGGATAATGATTAACATCAATTATTTTATTCAAATTGCGC 5455 Query 76205 ACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCACAAAC 76264 | |||||| |||| |||||||||| ||| ||| | | || | | || || Sbjct 5454 GTGGCCACTTTAGCCACTTCCTTTAGTTGTTCAAAGTCATACACTTTATTTTTGACGAAT 5395 Query 76265 ATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTA 76309 ||||| ||| || || || | ||| || ||||| |||| |||| Sbjct 5394 TGATTAACAGCAATCGAAGCCAAATTGCACACGGCCACCT-ATTA 5351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 168/248 (68%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 77348 TTTTTTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCA 77407 |||||||| || ||||| ||||| ||||| || || | |||||| || || || ||||| Sbjct 4176 TTTTTTGTCTCTTTGTGAAGATTGGATACAGCAATCCGAGCAGCAAGGATGGCGTAGTCT 4117 Query 77408 GGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTA 77467 ||||| | || || || || || ||||| || |||||| | || || || ||||| Sbjct 4116 GGATGCTTCGTTGTCATCGTTGCCGCAATTTCCGCAGCTAAATTGTCCAACTCAATAGTG 4057 Query 77468 GTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAAC 77527 | || || ||| || || ||| || || | | || | |||| ||| Sbjct 4056 GATACACCCGGATAGAGTCCCGAAATTACCTTAAGAGTAATGGCCGTGGGATTCACATGA 3997 Query 77528 TCGGTGTTCAAACCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACA 77587 || ||| || |||||||| | ||| | |||||||||||| ||||| || ||| Sbjct 3996 TCCATGTCCAGCCCATAACAAAGCTTTTGTACACGAGATGTGATCTTATCGAAGTGGAC- 3938 Query 77588 TTCTCCTT 77595 |||| ||| Sbjct 3937 TTCTTCTT 3930 >seq27661 Length=34041 Score = 188 bits (208), Expect = 1e-42 Identities = 363/519 (70%), Gaps = 25/519 (5%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGA---TTATCTT-CTTGTGACATAACTCCCATTT 46339 ||| || ||| ||||||| | ||| | | | | || |||| |||||||| ||| | Sbjct 22489 TTAGAAATCGGCATCTAACGTAAATTTACGTTCAGCTGGCTTG-GACATAACACCCGCCT 22431 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 |||| ||||| || || ||| || |||||||| ||||| || || | ||| ||||||| Sbjct 22430 TTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTACCATCAAGTGAAATATTTT 22371 Query 46400 CCATAAAATCAAACGGATTAGTAACATTA--TAAAtttttttA-AATCCTAA-TTCTGAA 46455 ||||||||||||| ||||| | ||| |||||||| | ||| ||| ||| | Sbjct 22370 CCATAAAATCAAAGGGATTCTCA--GTTAGGTAAATTTTCGGACAAT--TAAGCTCTACA 22315 Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCAT---TTCACAATTCATTCCT 46512 | |||||||||||||| |||| ||||| || || ||| ||||| |||||||| Sbjct 22314 AGAAGTCTATCTGCAACAAATTTAATATA---TTGCACCATGGAATCACAGTTCATTCCC 22258 Query 46513 ATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CG- 46570 | | | || || || ||||| || ||||| || |||||| | ||||| || || Sbjct 22257 AACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATCGCAACAGCCTCACGA 22198 Query 46571 ATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAA-ATGTTTAAACATTAAA 46629 ||| | |||| ||| || | ||| ||| | ||| ||| ||||||| | | Sbjct 22197 ATAATTTCGACAATAC--GAGCCACGGATGGCTTATG-AGCAAGGTGTCTAAACATAAGA 22141 Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || |||||||| ||| | || || |||||| || | |||||| ||||| ||||| Sbjct 22140 CAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTCGTTTGAAAAGGTGAGA 22081 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| |||||||| || || | ||| ||||| | || || || || |||||||| Sbjct 22080 CCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAATGACCCTGAAAAGAAG 22021 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCG 46788 ||||| || || || || || || | || || |||||| Sbjct 22020 ATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCCG 21982 Score = 127 bits (140), Expect = 3e-24 Identities = 216/307 (70%), Gaps = 7/307 (2%) Strand=Plus/Minus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||| || |||||||| || || || || ||||| ||||| |||||||| || || Sbjct 21775 TACATTTCGGAGTGAATGTTCTCGATTGCAATTTGAAACCCGTAGAAACATCTCGCCTCC 21716 Query 46981 GTAATCTGTACCTC-TGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATCAC 47038 |||| |||||| || ||| ||| || || |||| ||||| ||||| ||||| || Sbjct 21715 GTAACCTGTACTTCCTGTGTAAA-TCTCTCC-ACAATGTTCTCGTTCACAATTCCGTCCG 21658 Query 47039 TAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT-- 47096 ||||| ||||||||||| || || ||||| || ||| || | ||| ||| Sbjct 21657 ACGCAGCGAAAAATGCCAAAACTCGTGATATAAAGTACCGTTCCTCATCATTCAATTTCT 21598 Query 47097 -ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | |||||| | | || || | || ||||| || | ||||| || || Sbjct 21597 CCTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACTTCCTCCACAGTCCAAAAGCTTGCTA 21538 Query 47156 CTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTAT 47215 | || || |||||||| ||||| |||||| ||||| ||| |||| || || ||||||| Sbjct 21537 CGGCCTTCTTATACATGTTCCAAATATCAAAATATTCGATAGGAAGGATTACGAATCTAT 21478 Query 47216 TTGGATT 47222 | ||||| Sbjct 21477 TAGGATT 21471 >seq4608 Length=17199 Score = 127 bits (140), Expect = 3e-24 Identities = 173/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 170062 CTAGAAGGTTTGGTTTTAAAAGATATTAATGGTATATATGAGCCAGGAAAACGTAGATGG 170121 || ||||| ||||| | |||||||| ||| || |||||||| || || || ||| Sbjct 12427 CTGGAAGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACATTGG 12368 Query 170122 CTTAAAATAAAGAGAGACTACTTGAATGAGGGTTCGATGGCGGATTCTGCAGATTTAGTA 170181 ||||| | || | ||| || |||||||| || | ||||| ||| |||| || || || Sbjct 12367 CTTAAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTGGTT 12308 Query 170182 GTATTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAATGATG-GCAGTATTTTTGAT 170240 || ||||| | || | ||| | |||| ||||||||| || || ||| |||||||||| Sbjct 12307 GTTTTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCA-TATTTTTGAT 12249 Query 170241 GGGTTGCTACGATGACGACTCTGGTAAATGGAAGACTGTAACTAAATGTTC-TGGA 170295 ||||||||||||| | | ||||||| ||||||||| ||| |||| |||| Sbjct 12248 GGGTTGCTACGATACCTCAACCAAAAAATGGATGACTGTAAC-AAAGGTTCATGGA 12194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712193260132800