Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq20317 140 7e-28 seq42503 134 3e-26 seq66674 131 4e-25 seq62093 96.9 8e-15 seq17180 93.3 1e-13 >seq20317 Length=5186 Score = 140 bits (154), Expect = 7e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| ||||| | |||||| || ||||| ||||| ||||| || || | |||||| | || Sbjct 228 TCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGATAAAGTACGTCC 287 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| ||| || || || || | |||||||| || | | ||||||||||| Sbjct 288 ATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTT 347 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| ||||| |||||| | || | |||||||| || ||||||||||| || Sbjct 348 ATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACTTCAAGAGTGAT 407 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || |||||||| || || || | ||||||| Sbjct 408 TGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCATT 444 Score = 111 bits (122), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 || ||||| | || ||||| || || ||||| |||||||| |||| || || | ||| Sbjct 685 CTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGTCCA 744 Query 151950 TCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCT 152007 || || | ||||| || || ||||| | | ||||| || | | ||||||||||| Sbjct 745 TCCTCCAATTGCTTT--CCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCT 802 Query 152008 TTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAA 152067 | || || || || |||||| | || | |||||||| || |||||||| || | Sbjct 803 TATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGTGTGA 862 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||||||| ||||| |||| ||||| Sbjct 863 TGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 102 bits (112), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GG 151958 |||||| || || || |||||||||||||| || | ||||| | |||||||| | | Sbjct 468 ATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGACAAAGTACGTCCATCTTCCAACTG 527 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| || || ||||| || |||||||| || | | ||||||||||| |||||||| Sbjct 528 CTTT--CCAGCAAAGATCAGTCTCTGCTGATCTGGGGGAATTCCTTCCTTATCTTGAATC 585 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || || || | || | | | ||||| || || || || ||||| || || || Sbjct 586 TTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAACCTCGAGCGTAATGGTCTTTCCA 645 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATT 152105 || | ||| || || |||| ||||||| Sbjct 646 GTCAAAGTTTTGACAAAGATCTGCATT 672 Score = 100 bits (110), Expect = 7e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||||||||| || || ||||| || || ||||| | | |||||| |||||||| | Sbjct 12 ATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATCTTCCAATTG 71 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | || || || | | || |||||||| ||||| || || Sbjct 72 TTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTT 131 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | |||||||| || ||||||||||| || ||||| || || Sbjct 132 GGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGTTTTACCGGT 191 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 | ||||| || |||| |||||| Sbjct 192 TAAGGTCTTAACAAAGATTTGCATT 216 >seq42503 Length=950 Score = 134 bits (148), Expect = 3e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | ||||| || ||||| || ||||| |||||||||| | |||||| || Sbjct 423 TCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAAAGAGTTCTTCC 482 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| || || || || || | || ||||| || | | ||||||||||| Sbjct 483 ATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTT 542 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| |||||| | || | | ||||||| || |||||||| || || Sbjct 543 ATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACTTCAAGTGTGAT 602 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || ||||| || || ||||| | ||||||| Sbjct 603 GGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCATT 639 Score = 116 bits (128), Expect = 9e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||||||||| | ||||| || ||||| ||||||||||| ||||| | | ||||| || Sbjct 195 TCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCC 254 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||| |||| ||| || || ||||| | | || ||||| | | || |||||||| Sbjct 255 ATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTT 314 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| || ||| |||| | | || ||| || ||||||||||| || Sbjct 315 ATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGAT 374 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||| || || | ||||| || || | |||||| Sbjct 375 AGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCATT 411 Score = 96.9 bits (106), Expect = 8e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 151923 ATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTC 151982 ||||| || || | |||||| | |||||||||| ||| || || || || | ||| Sbjct 1 ATGTTATAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTC 60 Query 151983 TGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTG 152042 ||||| || | | ||||||||||| ||||| ||||| |||||| |||| | | Sbjct 61 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATAGTA 120 Query 152043 TCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGC 152102 || ||| || ||||||||||| |||||||| || || | ||||| || || | ||| Sbjct 121 TCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATYTGC 180 Query 152103 AT 152104 || Sbjct 181 AT 182 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||||||||| || || ||||| || || ||||| | | ||||| |||||||| | Sbjct 663 ATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGNGTTCTTCCATCTTCCAATTG 722 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | || || || | | || |||||||| ||||| || || Sbjct 723 TTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTT 782 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | |||||||| || ||||||||||| || ||||| || || Sbjct 783 GGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGTTTTACCGGT 842 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 | ||||| || |||| |||||| Sbjct 843 TAAGGTCTTAACAAAGATTTGCATT 867 >seq66674 Length=28361 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||||||||| || ||||| || ||||| ||||||||||| ||||| | | ||||| || Sbjct 28116 TCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCC 28175 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||| |||| ||| || || ||||| | | || ||||| | | || |||||||| Sbjct 28176 ATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTT 28235 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| |||||| | || | |||||||| || |||||||| || || Sbjct 28236 ATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCACTTCAAGTGTGAT 28295 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || ||||| || || || | ||||||| Sbjct 28296 GGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCATT 28332 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| |||||||| ||||| ||||||| |||||| | |||||||| | Sbjct 27213 CAAG-TGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCATCTTCCA 27271 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| | | ||||| || | | || || ||||| ||||||| Sbjct 27272 ATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTGTCTTGAA 27331 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| |||| | | | || || ||| ||||||||||| || ||||| | Sbjct 27332 TTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGATTGTTTTAC 27391 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || ||||| | |||||| Sbjct 27392 CAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | ||| | || ||||||||||| ||||| || || | |||||| Sbjct 27427 CTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTA 27486 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| |||| ||| || || ||||| | | ||||| || | | || ||| Sbjct 27487 CGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCT 27546 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||||||||| || ||| | |||| | || ||| || ||||||||| Sbjct 27547 TCTTTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGA 27606 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || ||||| || || ||||| | ||||||| Sbjct 27607 GTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATT 27648 Score = 104 bits (114), Expect = 5e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||||||||| || ||||| ||||| ||||| | | ||||| |||||||| | Sbjct 27672 ATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAAAGCGTTCTTCCATCTTCCAATTG 27731 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | || || || | | || |||||||| ||||||||||| Sbjct 27732 TTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGAATTTT 27791 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | | || ||| || ||||||||||| || ||||| || || Sbjct 27792 AGCTTTAACATTTTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATTGTTTTACCAGT 27851 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 || || || || |||| |||||| Sbjct 27852 AAGGGTTTTGACAAAGATTTGCATT 27876 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||||||||| || || ||||| || || ||||| | | ||||| |||||||| | Sbjct 27900 ATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGGGTTCTTCCATCTTCCAATTG 27959 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | || || || | | || |||||||| ||||| || || Sbjct 27960 TTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTT 28019 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | |||||||| || ||||||||||| || ||||| || || Sbjct 28020 GGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGTTTTACCGGT 28079 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 | ||||| || |||| |||||| Sbjct 28080 TAAGGTCTTAACAAAGATTTGCATT 28104 >seq62093 Length=56387 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 |||| || ||||| ||||| | ||||| || |||||||| || || || || |||| Sbjct 3528 CTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAGA 3587 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | || | ||||| || | | ||||||||||| || || || || || ||| | | Sbjct 3588 TGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACATTTT 3647 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | | |||||| || || ||||| ||||| || |||||||| | ||| || |||| Sbjct 3648 CGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACGA 3707 Query 152095 AGACCTGCATTTT 152107 ||| ||||| || Sbjct 3708 AGATTTGCATCTT 3720 >seq17180 Length=12851 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAA 151972 ||||||| |||||||| || | | || | ||||| |||| ||||| || || || Sbjct 4121 CTTTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCC--GCAAA 4064 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| | | ||||| || | | ||||| ||||| || || ||||| || ||| | Sbjct 4063 GATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTATCCTGGATTTTGGTCTTAACATT 4004 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | ||||| ||| || ||||| ||||||||||| |||||||| |||||||| Sbjct 4003 TTCGATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCAC 3944 Query 152093 GAAGACCTGCAT 152104 ||| | |||||| Sbjct 3943 GAAAATCTGCAT 3932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152591344443715