Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq27661 172 6e-38 seq4608 89.7 5e-13 >seq27661 Length=34041 Score = 172 bits (190), Expect = 6e-38 Identities = 317/455 (70%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 |||||||||| ||||||||||||||||| | |||| |||||||| || ||||| || Sbjct 22444 CATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTACCATC 22385 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 | ||| |||||||||||||||||||| ||||| || ||| || | ||| | || Sbjct 22384 AAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAG--TTAGGTAAA--TTTTC-GGA 22330 Query 23325 TAATT--CCTTT---AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCA 23379 |||| || | | ||| |||||||| ||||||| ||||||||| ||| ||||| Sbjct 22329 CAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATATTGCACCATGGAATCA 22270 Query 23380 TAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAA 23439 |||| || || | | | || || | || ||| || ||| ||||||| | | Sbjct 22269 CAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATCGCA 22210 Query 23440 ACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGG-ATATTTTAAA--TAC 23496 ||||| || ||| |||| |||||| | ||| | ||| ||| || | Sbjct 22209 ACAGCCTCACGAATAATTTCGACAATACGAGC--CAC-GGATGGCTTATGAGCAAGGTGT 22153 Query 23497 TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTA 23556 |||||| | ||| |||||||| ||| | || || || ||| || | ||| || Sbjct 22152 CTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTCGTTT 22093 Query 23557 GAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616 ||||| || | || ||||| | ||| ||||| || | ||| ||||| | ||||||||| Sbjct 22092 GAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAATGAC 22033 Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGC 23651 || |||||||| || ||||| || || |||||||| Sbjct 22032 CCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGC 21998 >seq4608 Length=17199 Score = 89.7 bits (98), Expect = 5e-13 Identities = 322/495 (65%), Gaps = 23/495 (5%) Strand=Plus/Minus Query 128505 TGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATCAATGGCAGATTCTGCTGATTTA 128564 ||| | ||||| |||| |||||||| ||| |||| ||||||||||| ||||||| || Sbjct 12370 TGGCTTAAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTG 12311 Query 128565 GTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGAATAAAATCTATATTT 128624 ||||| ||||||| || | ||||| ||| ||| | || || || |||||| Sbjct 12310 GTTGTTTTGGGTGGATGGTTTGGTACAGGACAAA---AGGGTGGGATCGTGAGCATATTT 12254 Query 128625 CTTATGGGATGTTATGATAAAGAAACAGATACATGGAAAACTGTTACAAAATGCTC---- 128680 | ||||| || || |||| ||| | | ||||| ||||| || ||| | || Sbjct 12253 TTGATGGGTTGCTACGATACCTCAACCAAAAAATGGATGACTGTAAC-AAAGGTTCATGG 12195 Query 128681 AGGGTTTAATGATGAAACATTAAAAGAATTACA-ATCAATTGATA-TGATTAAAATTAGT 128738 ||| ||| |||| | || | | || |||| ||| ||| || | ||| | Sbjct 12194 AGGATTTGATGACGCTACTCTGGAGGATCTACAGGACAA--AATAGTGCCAATAATGAAG 12137 Query 128739 AAAAATAAAG------ATAA---AATTCCAAATTGGTTAATTATTAACAGTATTCATTAT 128789 || | |||| || | ||||| ||| | | |||||| | | Sbjct 12136 AAGATCAAAGGAGACTATGACTCTGTTCCATCATGGCTGAAATGTAACAGAGGTGTAGTT 12077 Query 128790 CCGGATTTTATTATCAAAGATCC-AAAATCATCTCCTGTTTGGGAAATAATTGGATATGA 128848 || || |||||| |||| ||||| || | || ||||||||||| |||| ||| ||| Sbjct 12076 CCTGACTTTATTGTCAATGATCCTAAGGTTAT-GCCTGTTTGGGAGATAACTGGTGCTGA 12018 Query 128849 ATTTACAAAATCACCATCTCATACAGCGAATGGAATATCAATTAGGTTTCCTAGATGCAA 128908 |||| ||||||| ||||||||| ||||||||||| ||| | || || | | Sbjct 12017 ATTTTCAAAATCGGATATTCATACAGCAAATGGAATATCCATTCGTTTCCCCCGCGTTAC 11958 Query 128909 AAATATACGAAATGATAAAAATTGGTTATCTGCCACTAGTCTACAAGAACTTATATCCAT 128968 ||| | | || |||||||||||| | | || |||| ||| | ||| | || | | Sbjct 11957 AAAGCAAAGGAAGGATAAAAATTGGAAAACGGCAACTAATCTTGAGGAATTGATTGCACT 11898 Query 128969 ATATAAAGAATCAAA 128983 |||||| ||| || Sbjct 11897 CTATAAAACATCCAA 11883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520945880631000