Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq46208 161 1e-34 >seq46208 Length=8390 Score = 161 bits (178), Expect = 1e-34 Identities = 314/460 (68%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 50441 TTTAGATCGTTTAGGATTTAATTACAGAAACAAAGGAGATTTAGGACCTGTTTACGGTTT 50500 ||||||| | | ||||||| ||||| | | |||||| | || || || || || || Sbjct 5970 TTTAGATTCTATGGGATTTACCAACAGAGAAGAGGGAGATCTCGGTCCAGTATATGGATT 5911 Query 50501 TCAATGGAGACATTTTGGAGCGCGTTACATAAAT-TGCGACGTAAATTACGAAGGTCAAG 50559 |||||| | |||| ||||||| |||| ||| ||| || | ||| |||| ||| Sbjct 5910 CCAATGGCGTCATTATGGAGCGGAATACAATAATATGC-ACACTGACTACCAAGGGAAAG 5852 Query 50560 GCGTGGATCAACTGCAAAAAATTATAACGACGTTGAAAACAAACCCCGACGATCGGCGTA 50619 | || || || || | |||| | ||| | ||| ||||| ||||||| |||| Sbjct 5851 GAGTTGACCAGCTTTCTCATGTTATCAAGACTATAAAAGATAACCCAAACGATCGTCGTA 5792 Query 50620 TTTTAATGACCGCCTGGAATCCAACCGATATAGATCAAACCGTTTTACCTCCGTGTCATG 50679 | |||||| |||||||||||| | ||||| | | | | | || || ||||| Sbjct 5791 TATTAATGTGCGCCTGGAATCCTAAAGATATTCCCCTGATGGCTCTTCCCCCTTGTCACT 5732 Query 50680 TTTTATGTCAATTTTATGCCACAGACAATGTT---TTATCCTGTCAATGTTATCAAAGAT 50736 ||| ||||||||||| | ||||| | |||| ||||||| |||||| ||| Sbjct 5731 GTTTGGCTCAATTTTATG---TTGCCAATGGTGAACTATCTTGTCAATTATATCAACGAT 5675 Query 50737 CAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTCTTACGCTTTATTAACGTATT 50796 | || |||||||| ||||| || ||||| ||| |||| ||| || | |||||| | Sbjct 5674 CTGCAGATATGGGATTAGGAGTACCTTTTAACATAGCAAGTTATTCTCTCTTAACGATTA 5615 Query 50797 TGATCGCTCAAGCCGTCGATATGAAACCGGGAGAATTTATTCATACGTTAGGAGACGCTC 50856 || | || || | | || | ||||| || ||||| |||||||| ||||| || || | Sbjct 5614 TGTTGGCCCATGTGACCAATCTCAAACCTGGTGAATTCATTCATACCTTAGGTGATGCAC 5555 Query 50857 ATATTTACCTCGATCACGTCGATGCTTTAAAGGAGCAATT 50896 | | ||| | ||||| | ||||| ||| | || ||||| Sbjct 5554 ACGTATACAACAATCACATTGATGCCTTAGAAGAACAATT 5515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666381733637400