Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq42503 156 1e-32 seq62093 152 1e-31 seq66674 149 2e-30 seq20317 140 8e-28 seq17180 120 7e-22 seq65606 118 3e-21 seq65604 118 3e-21 seq34433 91.5 4e-13 >seq42503 Length=950 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| |||||||| ||||| || || || ||| ||||||| Sbjct 635 CAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTCAGAC 576 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || ||||| || || |||||||| ||||| || |||||| Sbjct 575 ACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAGCAA 516 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || || | ||||||||||| |||||| ||||||| || || Sbjct 515 AGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAATATC 456 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || ||||| || || | ||| | ||| | ||| Sbjct 455 CAGAAGGAGTCAACCCTTCACTTGGTTCTCAGATTGAGA 417 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| ||||| || || || ||| |||||| Sbjct 863 CAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCAGAC 804 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || || || ||||| || || || || || ||| Sbjct 803 ACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAACAA 744 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||||||||| || ||| | |||||||| | Sbjct 743 CGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACNCTTTCAGATTATAATATT 684 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || ||| | || |||||| | ||| Sbjct 683 CAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGA 645 >seq62093 Length=56387 Score = 152 bits (168), Expect = 1e-31 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || || || || ||||| ||||| ||| ||||| Sbjct 3714 CAAATCTTCGTCAAAACTTTGACGGGCAAGACCATTACCCTTGAGGTCGAACCTTCAGAT 3655 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| ||||| || |||||||| ||||| || |||||| Sbjct 3654 ACCATCGAAAATGTGAAGACTAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAGCAA 3595 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||||||||||||||||||| | | ||||||||| | Sbjct 3594 CGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGAAGGACTTTGTCTGATTATAACATT 3535 Query 178104 CAAAAAG 178110 || |||| Sbjct 3534 CAGAAAG 3528 >seq66674 Length=28361 Score = 149 bits (164), Expect = 2e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || ||||| ||||| || || || || ||| || Sbjct 27416 CAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCTGAT 27357 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| || ||||| ||||| || || || ||||| || |||||| Sbjct 27356 ACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAGGGCATTCCTCCAGATCAGCAA 27297 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||||||| | ||| | ||||||||||| | Sbjct 27296 CGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTATAACATT 27237 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||| || || || | |||||| Sbjct 27236 CAAAAAGAATCTACCCTTCACTTGGTTTTG 27207 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || ||||| ||||| || || || ||| || || Sbjct 27644 CAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAAGCTTCTGAT 27585 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| ||||||||||| || ||||| || |||||| Sbjct 27584 ACTATAGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAGCAA 27525 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | || |||||| | ||| | | || |||||| | Sbjct 27524 CGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGACGTACTTTATCAGACTATAACATT 27465 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || ||||| | ||||| ||||| ||| Sbjct 27464 CAAAAAGAGTCCACGTTGCATTTAGTTTTAAGACTTAGA 27426 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || || ||||| ||||| || || || ||| || || Sbjct 27872 CAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTCTGAT 27813 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| ||||| ||||| || || || || || ||| Sbjct 27812 ACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAACAA 27753 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||||||||| || ||| | ||||||||| | Sbjct 27752 CGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTTTCAGATTATAACATT 27693 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || ||| | ||||| ||| | ||| Sbjct 27692 CAAAAGGAATCTACTCTTCATTTAGTTTTAAGATTGAGA 27654 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| ||||| || || || ||| |||||| Sbjct 28100 CAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCAGAC 28041 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || || || ||||| || || || || || ||| Sbjct 28040 ACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAACAA 27981 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||||||||| || ||| | |||||||| | Sbjct 27980 CGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCCTTTCAGATTATAATATT 27921 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || ||| | || |||||| | ||| Sbjct 27920 CAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGA 27882 >seq20317 Length=5186 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||||||||| || ||||| ||||| || || |||||| |||||| Sbjct 896 CAAATCTTTGTGAAAACTCTCACGGGTAAAACCATCACACTTGAAGTGGAAGCTTCAGAC 837 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || ||||||||||| || || |||||| Sbjct 836 ACGATTGAAAATGTCAAGACCAAGATCCAGGATAAGGAAGGAATCCCCCCAGATCAGCAA 777 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| || | || |||||| | || | |||| || ||| | Sbjct 776 CGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACATTGTCCGACTACAACATT 717 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||| ||||| || || || Sbjct 716 CAAAAGGAATCCACTCTCCA 697 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||||||||| |||||||| ||||| || || |||||| |||||| Sbjct 440 CAGATTTTTGTTAAAACTCTCACTGGAAAAACAATCACTCTTGAAGTGGAAGCTTCAGAC 381 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || || || || || |||||||| ||||| || ||||| Sbjct 380 ACTATTGAAAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAG 321 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||||||| | ||| | | || |||||| | Sbjct 320 AGATTGATTTTTGCTGGYAAACAATTAGAAGATGGACGTACTTTATCAGACTATAACATT 261 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || ||| | || | ||| | ||| Sbjct 260 CAAAAGGAGTCGACCCTTCATTTGGTCCTTAGATTGAGA 222 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| ||||| || || || ||| |||||| Sbjct 212 CAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCAGAC 153 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || || || ||||| || || || || || ||| Sbjct 152 ACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAACAA 93 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||||||||| |||||| | |||||||| | Sbjct 92 CGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCAGATTATAATATT 33 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||||| ||||| || || ||| | || ||||| Sbjct 32 CAAAAGGAATCCACTCTTCATTTAGTATTGAG 1 >seq17180 Length=12851 Score = 120 bits (132), Expect = 7e-22 Identities = 141/188 (75%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || ||||| || ||||| ||||| || |||||| Sbjct 3935 CAGATTTTCGTGAAGACCCTCACGGGTAAAACTATTACCCTTGAGGTTGAGGCCTCAGAT 3994 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||| || || || || ||| || ||||| || || ||||| ||||| || ||||| Sbjct 3995 ACTATCGAAAATGTTAAGACCAAA-ATCCAGGATAAGGAGGGAATTCCTCCAGATCAGCA 4053 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 ||| | ||||| || ||||| || | || ||||| | || ||| | || || ||| | Sbjct 4054 ACGTTTGATCTTTGCGGGAAAGCAATTAGAGGATGGCCGTACCCTTTCGGACTACAACAT 4113 Query 178103 CCAAAAAG 178110 ||||||| Sbjct 4114 TCAAAAAG 4121 >seq65606 Length=3149 Score = 118 bits (130), Expect = 3e-21 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| || || |||||| | || || || || ||| |||| |||| ||| ||||| | Sbjct 2500 AAATCTTTGTCAAAACTTTGACGGGCAAGACCATCTCCCTTGAGGCCGAACCTTCAGATA 2441 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 ||||||| || || ||| ||| | || || || |||||||| ||||| || |||||| Sbjct 2440 CCATCGAAAATGTGAAAACTAAGCTCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAT 2381 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 | | ||||| || || | ||||| ||||||||||||||| | |||||||||| Sbjct 2380 GTCGCATCTTTGCTGGCCAGCAGCTTGAAGATGGAAGGACTTTGTCCGATTATAA 2326 >seq65604 Length=3149 Score = 118 bits (130), Expect = 3e-21 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| || || |||||| | || || || || ||| |||| |||| ||| ||||| | Sbjct 650 AAATCTTTGTCAAAACTTTGACGGGCAAGACCATCTCCCTTGAGGCCGAACCTTCAGATA 709 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 ||||||| || || ||| ||| | || || || |||||||| ||||| || |||||| Sbjct 710 CCATCGAAAATGTGAAAACTAAGCTCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAT 769 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 | | ||||| || || | ||||| ||||||||||||||| | |||||||||| Sbjct 770 GTCGCATCTTTGCTGGCCAGCAGCTTGAAGATGGAAGGACTTTGTCCGATTATAA 824 >seq34433 Length=49335 Score = 91.5 bits (100), Expect = 4e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 ||||| |||||||||||||| || |||| || ||| | ||||| || ||||||| | Sbjct 45331 ATTTTTGTGAAAACTCTCACTGGTAAAAATATAACCTTTGAGGTTGATGGCTCAGATTCT 45390 Query 177987 ATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 || ||||| || || || ||| || ||||| ||| |||| || ||| || |||||||| Sbjct 45391 ATGGAGAATGTTAAGACCAAA-ATCCAGGA-TAAGGAGGATCCCTTCCAGATCAGCAACG 45448 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 | ||||| ||| ||| || | ||||||| ||||| | || ||| | | Sbjct 45449 TTTGATCTTTGCCAGAATGAAGTTAGAAGATGACCTTACTCTGTAGAACTAAAACATTAA 45508 Query 178106 AAAAGAATCAACACTGCATCTTGTTT 178131 ||||||||| || || || |||| || Sbjct 45509 AAAAGAATCCACTCTTCA-CTTGGTT 45533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202448562339010