Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq160 257 2e-63 >seq160 Length=904994 Score = 257 bits (284), Expect = 2e-63 Identities = 511/754 (68%), Gaps = 2/754 (0%) Strand=Plus/Plus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 || ||||| || ||| | || |||||| |||||| | || |||||||| || | | Sbjct 788647 AACCTATCAGCAACATACTCAATATATGTACACATTGCATTACAATTCATTCCGATTAAA 788706 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || || |||||||| || | |||| ||| || || ||| || || ||| ||| Sbjct 788707 CTGACAGGCAGAGCTTCAGTTAGAAATTCTTGTTCGATTTTAACAGCATCACAAATGATA 788766 Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAA 16972 | | | ||||| | |||||| | || | ||| || | || || || || Sbjct 788767 TTCGTGATACGTTCTTGCGACGGTTTCTGAACTAAATGAGAGAAAAGAAGGCAGGCAAAG 788826 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 || ||||| || || || || ||| || | ||| || || || || || || |||||| Sbjct 788827 TCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAACCTGGCATC 788886 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 || || ||||| ||||| ||||| || || || ||||| || ||||| || || Sbjct 788887 AAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCA 788946 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 || | || || || | | |||||| ||| | || | | |||| | ||||| || Sbjct 788947 ACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGCTTTTGGAGCTTATCCAATTG 789006 Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212 | |||| | || |||| | || ||| ||||||||| ||||| || || || | Sbjct 789007 AGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCGATGGCGTTGAACAAATAT 789066 Query 17213 TCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271 |||||||| |||||| || |||||| || || || || | || |||||||| ||||| Sbjct 789067 TCTTTTTC-TGTAGGGTCCTGTATATAGGTTTCTATCAGAATACTATACATTTCAGAGTG 789125 Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 ||||||||||| ||||| ||||| ||||||||||| || ||||| | ||| ||||| || Sbjct 789126 AATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTTCTGGTATCTGAACCTC 789185 Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | ||||| || ||| ||||| || || || || || || |||||||| || Sbjct 789186 CTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCAGAAGCAGCGAAAAAGGC 789245 Query 17392 CAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATC 17451 || | |||| |||||||| | |||||||| | ||| ||| | ||| | || Sbjct 789246 TAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGATTCTTCCATTGCTTCGAGTC 789305 Query 17452 TTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATT 17511 | || | || ||||| || | ||||| || ||| |||| | ||||||| | | Sbjct 789306 TCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTGCTTCTTTATACTTTGT 789365 Query 17512 CCAAATATCATTGTATTGTATGGGGAATACAACA 17545 ||| ||||| ||||| || || || ||||| ||| Sbjct 789366 CCATATATCTTTGTACTGAATAGGAAATACTACA 789399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517387793877240