Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq160 295 7e-75 >seq160 Length=904994 Score = 295 bits (326), Expect = 7e-75 Identities = 530/769 (69%), Gaps = 4/769 (1%) Strand=Plus/Plus Query 16016 CCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAA 16075 || |||||| | | || ||||| || ||| | || |||||| ||||||| | ||| Sbjct 788632 CCAAGTTCCTTCAGCAACCTATCAGCAACATACTCAATATATGTACACATTGCATTACAA 788691 Query 16076 TTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACC 16135 || ||||| || | | || || ||||||| |||| ||||| |||||| || ||| Sbjct 788692 TTCATTCCGATTAAACTGACAGGCAGAGCTTCAGTTAGAAATTCTTGTTCGATTTTAACA 788751 Query 16136 GCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAAC 16195 || || |||||||| ||| ||| || |||||| | || || || || Sbjct 788752 GCATCACAAATGATATTCGTGATACGTTCTTGCGACGGTTTCTGAACTAAATGAGAGAAA 788811 Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 | || || || ||||| ||||| | ||||| || ||| || | ||| || || ||| Sbjct 788812 AGAAGGCAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAA 788871 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 ||||| |||||||| || || ||||| ||||||||||| || ||||| || || Sbjct 788872 GTTAAACCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAG 788931 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 || ||||| || ||||| | || ||||| | | |||||| ||| | || | | |||| Sbjct 788932 AAAAATATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGT-GGAGCTTTT 788990 Query 16376 TTA-CGAATCCATTTCTGTACCC-ATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTA 16433 | | ||||| || | ||| ||||| |||||| || |||| ||||||||| | Sbjct 788991 GGAGCTTATCCAATTGAGGGCCCAATTCGCCTTTTT-CGCTACACAAGGCATCGTTTCGA 789049 Query 16434 TGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAAC 16493 |||| || ||||| | |||||||| | || |||||| || || ||||| | || Sbjct 789050 TGGCGTTGAACAAATATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATAC 789109 Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553 | |||||||| ||||| |||||||| || ||||| ||||| || || ||||| ||||| | Sbjct 789110 TATACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTT 789169 Query 16554 CCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | | ||| || || ||| |||| || | | ||| ||||| || ||||| ||| Sbjct 789170 CTGGTATCTGAACCTCCTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCAG 789229 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 ||||| ||||| || || | ||| |||||||| | ||||||| | ||| | | Sbjct 789230 AAGCAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGATTCT 789289 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||| | || | ||| || | || ||||| || | ||||| ||| ||| ||| Sbjct 789290 TCCATTGCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTG 789349 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 | | ||||||| || |||| ||||| ||||| || || |||||||| || Sbjct 789350 CTTCTTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATACTAC 789398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511258463356760