Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq643 125 6e-24 >seq643 Length=490110 Score = 125 bits (138), Expect = 6e-24 Identities = 394/599 (66%), Gaps = 21/599 (4%) Strand=Plus/Plus Query 18549 GATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGA 18608 || || |||||| | || || || || ||||||| ||| || || | || ||| Sbjct 176420 GACCGCACAGGAGTAGGTACTTTTTCGATATTTGGTGCTCAAATGCGTTATAGCTTACGA 176479 Query 18609 AATGAA---TTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAG 18665 |||||| |||||| | ||||| || || | || |||||||| | ||| || |||||| Sbjct 176480 AATGAAATATTTCCTTTATTAACAACGAAAAGGGTATTTTGGAGAGGCGTTGTCGAAGAG 176539 Query 18666 TTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACAC 18725 | | |||||||| | || || || || ||||| || |||| | | || Sbjct 176540 CTACTCTGGTTTATTAGAGGAAGTACGAATGCCTTTGAACTAAGCGATAAAAAAGTTCAT 176599 Query 18726 ATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACAC 18785 || ||||| | | | | || | | |||| ||| | | | ||||||| | Sbjct 176600 ATTTGGGACGCAAATAGTACAAG-ACAGTTCT---TAGACTCCGTTGGCCTAAAAGATAG 176655 Query 18786 ACG----GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATA 18841 | || || | || || || || || || || ||||||||||||||||| || || Sbjct 176656 AGAAGAAGGTGATTTAGGTCCGATATATGGTTTTCAATGGAGACATTTTGGAGCTGAGTA 176715 Query 18842 TAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCT-GCAAACTGTTATAG 18900 |||| || || ||||| | | ||||||| || ||| | || | ||| ||| Sbjct 176716 CAAAGGTATGCATGCAGACTATAAAAATAAAGGAATTGACCAGTTAGCTCA-TGTAATAA 176774 Query 18901 ATACAATTAAAACAA-ACCCA--GAAAGCCGACGAATGATTATATCGTCTTGGAATCCAA 18957 |||| || ||||||| ||| | || | |||| || || || | | ||||| || | Sbjct 176775 ATACTATAAAAACAAGACCTAATGATA---GACGCATCATAATGTGTGCATGGAACCCTA 176831 Query 18958 AGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGT-CAGTTTTACGTTGCA 19016 |||||||| ||||| | ||||||| || || ||| || ||||||| || | | Sbjct 176832 TTGATATCCCAGAAATGGCATTACCTCCTTGCCA-TTGTTTGGTCCAGTTTTTTGTAGGA 176890 Query 19017 AACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCG 19076 || | |||| | || || ||| | || || |||| | |||||||| ||||| || || Sbjct 176891 AATGATGAACTTTCATGTCAACTTTATCAACGATCTGCAGATATGGGACTTGGAGTGCCT 176950 Query 19077 TTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || || |||||| | || || | || || || || |||| || ||||| ||||| || Sbjct 176951 TTTAATATTGCTAGTTACGCTTTGCTAACATATATGATAGCACACGTTACTGGACTGAA 177009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399385231580685