Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq643 214 1e-50 >seq643 Length=490110 Score = 214 bits (236), Expect = 1e-50 Identities = 375/537 (70%), Gaps = 13/537 (2%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| || || || ||||| | |||| | || || |||||||| ||||| |||||||| Sbjct 177001 AGTAACGTGTGCTATCATATATGTTAGCAAAGCGTAACTAGCAATATTAAAAGGCACTCC 176942 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 | |||||||| || |||| |||||| |||||||| ||||| | ||| | ||| | Sbjct 176941 AAGTCCCATATCTGCAGATCGTTGATAAAGTTGACATGAAAGTTCATCATTTCCTACAAA 176882 Query 101872 AAATTG-ACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCC 101930 ||| || || || | ||| ||||| || || |||||| || || || | |||| Sbjct 176881 AAACTGGACCAAACA-ATGGCAAGGAGGTAATGCCATTTCTGGGATATCAATAGGGTTCC 176823 Query 101931 AAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTT 101990 | |||||||||| || | |||||| |||| ||||||||||||||| || | || Sbjct 176822 ATGCACACATTATGATGCGTCTATCATTAGGTCTTGTTTTTATAGTATTTATTACATGAG 176763 Query 101991 TTAATTGGTCAACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCG 102049 ||| ||||||| ||||| |||||| || || | | |||||| || || ||||| Sbjct 176762 CTAACTGGTCAATTCCTTTATTTTTATAGTCTGCATGC-ATACCTTTGTACTCAGCTCCA 176704 Query 102050 AAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAA 102109 ||||| ||||| ||||| ||||| | || || | ||| ||||| ||||| || | | Sbjct 176703 AAATGTCTCCATTGAAAACCATATATCGGACCTAAATCACCTTCTTCTCTATCTTTTAGG 176644 Query 102110 CCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCAC---GCCAGCT 102166 |||| ||||| || ||| | | ||| || |||||||| || || | | Sbjct 176643 CCAACGGAGTCTAAGAACTGTCTTGTACTATTTGCGTCCCAAATATGAACTTTTTTATC- 176585 Query 102167 GCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACA 102226 ||| ||| || | | ||| |||||| |||||||| | || ||||| ||||| Sbjct 176584 GCT--TAGTTCAAAGGCATTCGTACTTCCTCTAATAAACCAGAGTAGCTCTTCGACAACG 176527 Query 102227 CCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA---TTCATTTTCTAAACTA 102280 |||||||||||||| || || || ||||| | ||||| ||||||| ||| ||| Sbjct 176526 CCTCTCCAAAATACCCTTTTCGTTGTTAATAAAGGAAATATTTCATTTCGTAAGCTA 176470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361143803743643