Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq318 111 1e-19 seq792 87.8 2e-12 >seq318 Length=663677 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| | || || || ||||||||| ||| |||||| | Sbjct 605688 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACCATTACCTTGGAAGTGGAACCATCC 605747 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || || ||||| | ||| ||| ||| Sbjct 605748 GACACCATCGAGAATGTAAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAA 605807 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || ||||||||||||||| || ||| || | ||||| || Sbjct 605808 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCAGAACCTTGTCTGATTATAAC 605867 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||| |||||||| |||||| |||| Sbjct 605868 ATTCAGAAAGAATCTACACTTCACTTGGT 605896 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || ||||||| || || || || ||||| || ||| ||||| | Sbjct 605915 AATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACGTTAGAAGTTGAACCATC 605974 Query 29021 AGAGACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 || || | | || | | |||| |||| | || ||||| || | ||| ||| Sbjct 605975 TGACACCATCGA-GAACGTGAAAGCTAAAA-TCCAAGACAAAGAGGGCATTCCCCCAGAC 606032 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||||||| | |||||||| || ||||||||||||||| | ||| | | ||||| Sbjct 606033 CAACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTATCAGATTAT 606092 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || |||||||| |||||||| |||||| |||| Sbjct 606093 AACATTCAGAAAGAATCTACACTTCACTTGGT 606124 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| || | ||| ||| ||||||||| | ||||| || || |||||||||||| Sbjct 606237 GACAAAGAGGGCATTCCCCCAGACCAACAAAGATTGATCTTCGCTGGAAAACAACTGGAA 606296 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| || | ||||| || |||||||| |||||||| ||||| |||| | Sbjct 606297 GATGGCCGAACCTTGTCAGATTATAACATTCAGAAAGAATCTACGCTTCATTTGGTTCTT 606356 Query 29175 CGATTACGAGGAGG 29188 || | ||||||| Sbjct 606357 CGTCTCAGAGGAGG 606370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | ||| ||| ||||||||| | |||||||| || |||||||||||| Sbjct 605553 GATAAGGAAGGAATTCCCCCAGACCAACAAAGATTGATCTTTGCTGGAAAACAACTGGAA 605612 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | ||| || | ||||| || ||||| || ||||| || || ||| |||| Sbjct 605613 GATGGCCGAACCTTGTCAGATTATAACATTCAAAAAGAATCCACACTCCACTTGGT 605668 >seq792 Length=424820 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | ||||| || ||||| ||| ||| |||||| | Sbjct 96926 ATGCAAATTTTCGTTAAAACACTCACGGGTAAGACCATCACCCTCGAGGTCGAACCCTCT 96985 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| || || || || ||||| | ||| |||||| Sbjct 96986 GACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATCCCCCCAGATCAG 97045 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || ||||| || |||||| |||| | |||| |||||| Sbjct 97046 CAAAGATTGATCTTCGCTGGAAAACAGCTCGAAGATGGTCGAACTCTTTCCGACTACAAT 97105 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 ||||||||||| || || || || Sbjct 97106 ATTCAGAAGGAGTCCACCCTCCA 97128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428208660124415