Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq318 98.7 8e-16 seq805 86.0 5e-12 seq792 86.0 5e-12 >seq318 Length=663677 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||| |||| || | || || || || ||||||||||| || | Sbjct 605916 TTCCACCACGGAGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAG 605857 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || |||| | | || ||||| ||||| || || | || | ||| || ||||| || Sbjct 605856 ACAAGGTTCTGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGG 605797 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| || || ||| || | ||| || || || ||| Sbjct 605796 GAATTCCTTCCTTGTCCTGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCA 605737 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| |||||||||||| || |||| ||||||||||| || ||||| Sbjct 605736 CTTCCAAGGTAATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || |||| || | || |||| ||| | || || || || ||||||||||| || Sbjct 606373 TTGCCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCT 606314 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || |||| || | || ||||| ||||| || || | || | ||| || ||||| | Sbjct 606313 GACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGG 606254 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||| || ||||| ||| || |||||| | ||| || || || || Sbjct 606253 GGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCA 606194 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| |||||| ||||| || |||| ||||||||||| || ||||| Sbjct 606193 ACTTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || |||||||||||||| || | || |||| || | || ||||| ||||| || Sbjct 605656 GTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCCA 605597 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | ||| || ||||| ||| | |||||||| || |||||| ||| Sbjct 605596 GCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCTTGGATCTTGGCTTTA 605537 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || ||| || || || | ||| || || || || || | |||| Sbjct 605536 ACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTTTTACCAGTCAGCGTT 605477 Query 21159 TTGACAAATATTTGCATTTTGAA 21181 || ||||| || |||||| |||| Sbjct 605476 TTCACAAAGATCTGCATTCTGAA 605454 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || || || ||||||||||| || | | |||| || | || ||||| ||||| || Sbjct 606112 GTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCCATCTTCCAGTTGTTTTCCA 606053 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | ||| || ||||| ||| | ||| || ||||| ||| || |||| Sbjct 606052 GCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTGGATTTTAGCTTTC 605993 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || ||| || || ||| | || |||||||| || ||||| ||| Sbjct 605992 ACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTTTCCAGTTAAAGTT 605933 Query 21159 TTGACAAATATTTGCATT 21176 |||||||| || |||||| Sbjct 605932 TTGACAAAGATCTGCATT 605915 >seq805 Length=567825 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || | ||||||||||| | | || |||| || | || ||||| ||||| || Sbjct 473786 GTGGATTCTCTCTGAATGTTATAAGCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCCA 473727 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || | ||| || ||||| || | ||| || ||||| ||| || |||| Sbjct 473726 GCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCTTTGTCTTGGATTTTAGCTTTC 473667 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || ||| || || ||| | || |||||||| || ||| | ||| Sbjct 473666 ACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTTTCCAGTTGAAGTT 473607 Query 21159 TTGACAAATATTTGCAT 21175 ||||||||||||||||| Sbjct 473606 TTGACAAATATTTGCAT 473590 >seq792 Length=424820 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 20961 CTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCG 21020 ||||| || | ||| | ||||||||||| ||||| || ||||| | || ||| | | Sbjct 97140 CTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAAAGAGTTCGACCA 97081 Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080 || || |||||||| || || | || | ||| ||||| || ||| | ||||||||| Sbjct 97080 TCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGGATCCCTTCCTTG 97021 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || |||||| || || | ||| || ||| ||| || || | ||| ||| Sbjct 97020 TCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACCTCGAGGGTGATG 96961 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || | ||||| || || |||||||| Sbjct 96960 GTCTTACCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422133666694388