Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq253 89.7 4e-13 seq792 82.4 6e-11 >seq253 Length=804807 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||||||||| | | || ||||| || ||||||||||||||| ||| || | || Sbjct 281481 AGATCAACAGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGACGTACTTTGTCGGA 281422 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||||||||||||||||||| | || || ||||| | ||||| Sbjct 281421 CTACAATATACAAAAGGAATCTACTCTTCACCTTGTATTGCGATTGAGGGGAGG 281368 >seq792 Length=424820 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | |||||| | ||||| || ||||| ||| ||| |||||| | Sbjct 96926 ATGCAAATTTTCGTTAAAACACTCACGGGTAAGACCATCACCCTCGAGGTCGAACCCTCT 96985 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| || || || || ||||| | ||| |||||| Sbjct 96986 GACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATCCCCCCAGATCAG 97045 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | ||||| || || ||||| | |||||| |||| | |||| |||||| Sbjct 97046 CAAAGATTGATCTTCGCTGGAAAACAGCTCGAAGATGGTCGAACTCTTTCCGACTACAAT 97105 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||| ||||| || || || || Sbjct 97106 ATTCAGAAGGAGTCCACCCTCCA 97128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410674674347702