Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq160 181 1e-40 seq318 93.3 4e-14 >seq160 Length=904994 Score = 181 bits (200), Expect = 1e-40 Identities = 417/624 (67%), Gaps = 12/624 (2%) Strand=Plus/Minus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 ||||| || | || || || || ||| || || ||| | ||| ||| | || || Sbjct 789404 CGGTTTGTAGTATTTCCTATTCAGTACAAAGATATATGGACAAAGTATAAAGAAGCAGAA 789345 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG--- 116719 || || |||||||| ||||| || |||||||| ||| ||| | ||| || Sbjct 789344 GCTTCCTTCTGGACAACTGAGGAAGTTGACCTGTCTCGAGACTCGAAGCAATGGAAGAAT 789285 Query 116720 CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGC 116779 | || || ||| || | |||||||| ||| || | ||||||||||| || Sbjct 789284 CTCTCTAAGGAC---GAAAGACATTTCATTTCGCATGTTTTAGCCTTTTTCGCTGCTTCT 789228 Query 116780 GACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAG 116839 || || || ||||| || || | |||||| | ||| ||||||||| ||| | | || Sbjct 789227 GATGGTATTGTCAATGAAAACTTAGTCGAGAGATTCAGTCAGGAGGTTCAGATACCAGAA 789168 Query 116840 GCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCG 116899 || || ||||| ||||| ||||| || || ||||||||| | ||||| ||||||||| Sbjct 789167 GCTCGCTGCTTTTACGGTTTTCAAATAGCTATGGAGAACATTCACTCTGAAATGTATAGT 789108 Query 116900 ACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCC 116956 | || || || || || | | | || | || | ||| |||||| |||||| Sbjct 789107 ATTCTGATAGAAACCTATATACAGGACCCTAC--AGAAAAAG-AATATTTGTTCAACGCC 789051 Query 116957 ATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGC 117016 ||||| |||||||| || || | ||||| | ||||| || ||||| | | Sbjct 789050 ATCGAAACGATGCCTTGTGTAGCGAAAAAGGCGAATTGGGCCCTCAATTGGATAAGCTCC 788991 Query 117017 AGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTT 117076 | | || | |||| || || | || || ||||| || || || || | || || Sbjct 788990 AAAAGCTCCACTTTCGCTGAACGAATTGTAGCTTTCGCTGCAGTTGAAGGGATATTTTTC 788931 Query 117077 TCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACT 117136 || || ||||| || || ||||| ||| | ||||| || || | ||||| || | ||| Sbjct 788930 TCTGGTAGTTTTGCAGCTATATTCTGGTTGAAGAAGCGTGGTTTGATGCCAGGTTTAACT 788871 Query 117137 TTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTG 117196 ||| || || | || |||||||| || ||| ||||||| ||||||||||| | || Sbjct 788870 TTCTCAAATGAATTGATTTCCAGGGATGAAGGTTTGCATTGTGACTTTGCCTGCCTTCTT 788811 Query 117197 TTCAAGCATTTGGTGCAGCGACCG 117220 ||| ||||| || ||| |||| Sbjct 788810 TTCTCTCATTTAGTTCAGAAACCG 788787 >seq318 Length=663677 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || || || || || ||| | || || ||| | || Sbjct 606144 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACAATTACCTTGGAAGTTGAACCATCC 606203 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | ||||| | |||||||||||||| ||| | ||||| Sbjct 606204 GACACCATCGAGAACG-TGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCA 606262 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || ||||| ||||| || | || ||| | || || || Sbjct 606263 ACAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAA 606322 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| ||||| || | ||||| ||| Sbjct 606323 CATTCAGAAAGAATCTACGCTTCAT 606347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515062103225680