Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq643 237 2e-57 seq318 141 1e-28 seq805 122 1e-22 >seq643 Length=490110 Score = 237 bits (262), Expect = 2e-57 Identities = 361/511 (71%), Gaps = 5/511 (1%) Strand=Plus/Minus Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 ||||| |||||||| || | ||| |||||||||| |||||| || || || | ||| Sbjct 176994 TGTGCTATCATATATGTTAGCAAAGCGTAACTAGCAATATTAAAAGGCACTCCAAGTCCC 176935 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAAT 205569 ||||| || |||| |||||| | |||||||| ||| || || ||| |||| ||| Sbjct 176934 ATATCTGCAGATCGTTGATAAAGTTGACATGAAAG---TTCATCATTTCCTACAAAAAAC 176878 Query 205570 TGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCT 205629 || || |||||||| ||||| |||| |||| | | | ||| ||||| ||||| || Sbjct 176877 TGGACCAAACAATGGCAAGGAGGTAATGCCATTTCTGGGATATCAATAGGGTTCCATGCA 176818 Query 205630 GTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAAT 205689 | ||| || |||| | |||| | ||||||| ||||||| | ||| | ||| Sbjct 176817 CACATTATGATGCGTCTATCATTAGGTCTTGTTTTTATAGTATTTATTACATGAGCTAAC 176758 Query 205690 TGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGA 205749 || |||| ||||| |||| |||| | || || |||| | | || | ||| |||||||| Sbjct 176757 TGGTCAATTCCTTTATTTTTATAGTCTGCATGCATACCTTTGTACTCAGCTCCAAAATGT 176698 Query 205750 CGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACC-ACG 205808 | ||||||||||||||| | ||||||||||||||||||| |||||| || | || ||| Sbjct 176697 CTCCATTGAAAACCATATATCGGACCTAAATCACCTTCTTCTCTATCTTTTAGGCCAACG 176638 Query 205809 tttttttatatattttaatgatccattttcatcccaaatatggattcctttattttttaG 205868 | | | | | | | || | |||| | ||||||||||| | | ||||| |||| Sbjct 176637 GAGTCTAAGA-ACTGTCTTGTACTATTTGCGTCCCAAATATGAACTTTTTTATCGCTTAG 176579 Query 205869 AATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCA 205928 | | ||| || ||| |||||||| | || ||||| |||| |||||||| Sbjct 176578 TTCAAAGGCATTCGTACTTCCTCTAATAAACCAGAGTAGCTCTTCGACAACGCCTCTCCA 176519 Query 205929 AAACATTGATTTTGTTGTAAATAATGGAAAT 205959 ||| | ||| ||||| ||||| |||||| Sbjct 176518 AAATACCCTTTTCGTTGTTAATAAAGGAAAT 176488 >seq318 Length=663677 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || || || || |||||||| || | ||| ||||| || Sbjct 605459 AATGCAGATCTTTGTGAAAACGCTGACTGGTAAAACTATCACCCTTGAGGTTGAACCATC 605518 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| || || |||||||| ||||| || || || || || Sbjct 605519 TGACACCATCGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAGACCA 605578 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||||||| | || ||| | ||||| || ||||||||| Sbjct 605579 ACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAA 605638 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | || |||||| | ||| | || |||||||| Sbjct 605639 CATTCAAAAAGAATCCACACTCCACTTGGTTCTTCGTCTCCGTGGTGGTAT 605689 >seq805 Length=567825 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || ||| || || || ||||| |||| ||||| || | Sbjct 473590 ATGCAAATATTTGTCAAAACTTCAACTGGAAAGACCATAACGTTAGAAGTTGAACCATCT 473649 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| ||||| ||||| ||||| || || || || || ||| Sbjct 473650 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCGCCAGACCAA 473709 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || ||||||||| | || ||| | ||||| || || |||||| Sbjct 473710 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGCTTATAAC 473769 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | |||||| || | || |||||||| ||| | || |||||||| Sbjct 473770 ATTCAGAGAGAATCCACACTCCACTTGGTTTTTCGTCTCCGTGGTGGTAT 473819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755225652022400