Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq629 116 4e-21 seq1263 113 5e-20 seq534 113 5e-20 seq328 111 2e-19 seq141 111 2e-19 seq92 111 2e-19 seq649 109 6e-19 seq242 107 2e-18 seq203 107 2e-18 seq1603 105 8e-18 seq1029 105 8e-18 seq278 105 8e-18 seq57 105 8e-18 seq289 93.3 5e-14 seq637 89.7 6e-13 seq260 84.2 3e-11 >seq629 Length=374144 Score = 116 bits (128), Expect = 4e-21 Identities = 94/112 (84%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 60036 AACAACAAATTAACGTTTATGAAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTC 60093 || || ||||| |||||| ||||| |||||| |||| ||||||||||||| |||| Sbjct 190709 AAGAAAAAATT---GTTTATTAAAAAAAAATTCTCCACGGCGGGGAATCGAACCCCGGTC 190653 Query 60094 TCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGAATAT 60145 ||||||||||||||||| ||||| ||||||||||||||||||| | ||||| Sbjct 190652 TCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGACTTAATAT 190601 >seq1263 Length=216083 Score = 113 bits (124), Expect = 5e-20 Identities = 81/92 (88%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 63197 AAAAAATATCTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 63138 Query 60117 TCACCACTATACTACCGAGGATTGAATATATA 60148 | ||||||||||||||||||| || || |||| Sbjct 63137 TGACCACTATACTACCGAGGA-TGTATTTATA 63107 >seq534 Length=582160 Score = 113 bits (124), Expect = 5e-20 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 547436 AAAAAAATTCTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 547377 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||||||||||| Sbjct 547376 TGACCACTATACTACCGAGGAT 547355 >seq328 Length=661709 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| | Sbjct 118354 ATAAAAAAAATTCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 118295 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||||||||||||| ||| Sbjct 118294 TACTGACCACTATACTACCGGGGA 118271 Score = 109 bits (120), Expect = 6e-19 Identities = 82/96 (85%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 445623 AAAAAAAATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 445682 Query 60117 TCACCACTATACTACCGAGGATTGAATATATAACTT 60152 | ||||||||||||||| |||| |||| ||| || Sbjct 445683 TGACCACTATACTACCGGGGAT---ATATCTAATTT 445715 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 352759 AAAAAAAATCTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 352700 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 352699 TGACCACTATACTACCGAGGA 352679 >seq141 Length=994726 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || |||||| | ||||||||| ||||||||||||| ||||||||||||||||||||| | Sbjct 327188 ATAAAAAATATACTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 327247 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||||||||||||| ||| Sbjct 327248 TACTGACCACTATACTACCGGGGA 327271 >seq92 Length=1270183 Score = 111 bits (122), Expect = 2e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 673823 AAAAAAATACTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 673882 Query 60117 TCACCACTATACTACCGAGGATTGAATATATAACTTGAA 60155 | ||||||||||||||||||| | ||| | || ||||| Sbjct 673883 TGACCACTATACTACCGAGGACTTAATGTCTATGTTGAA 673921 >seq649 Length=884455 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 517186 TCTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 517245 Query 60125 ATACTACCGAGGATT 60139 ||||||||||||||| Sbjct 517246 ATACTACCGAGGATT 517260 >seq242 Length=734329 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 488191 TCTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 488132 Query 60125 ATACTACCGAGGAT 60138 |||||||||||||| Sbjct 488131 ATACTACCGAGGAT 488118 >seq203 Length=1434037 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||||| ||||||| || |||||||||||| ||||||||||||||||||||| | Sbjct 426025 ATTAAAAATTATCTCCTCTGCGGGGAATCGAACCTCGGTCTCCCGCGTGACAGGCGGGGA 426084 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||||||| || Sbjct 426085 TACTGACCACTATACTACCGATGA 426108 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||||| ||||||| || | ||||||||||| ||||||||||||||||||||| | Sbjct 426321 ATTAAAAATTATCTCCTCTGCGGAGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 426380 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||||||| || Sbjct 426381 TACTGACCACTATACTACCGATGA 426404 >seq1603 Length=133004 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 109755 AAAAAAAATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 109814 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||| ||| Sbjct 109815 TGACCACTATACTACCGGGGA 109835 >seq1029 Length=311713 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 41803 AAAAAAAATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 41744 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||| ||| Sbjct 41743 TGACCACTATACTACCGGGGA 41723 >seq278 Length=1775425 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1449679 AAAAAAAATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1449738 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||| ||| Sbjct 1449739 TGACCACTATACTACCGGGGA 1449759 Score = 104 bits (114), Expect = 3e-17 Identities = 82/97 (85%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1456356 CTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1456297 Query 60126 TACTACCGAGGATTGAATATATAACTTGAATATTACA 60162 |||||||| ||| | | |||| || | | |||||| Sbjct 1456296 TACTACCGGGGACT-TACATATTTCTAGTAAATTACA 1456261 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||||||||| |||||||||||| || ||||||| ||||||| || |||| Sbjct 35711 AAAAAGTATCTCCTCGGCGAGGAATCGAACCCAGGCCTCCCGCTTGACAGGTGGGGATAC 35770 Query 60117 TCACCACTATACTACCG 60133 | |||||| |||||||| Sbjct 35771 TGACCACTCTACTACCG 35787 >seq57 Length=4625438 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2690105 AAAAAAAATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2690046 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||| ||| Sbjct 2690045 TGACCACTATACTACCGGGGA 2690025 >seq289 Length=716807 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||||| ||||||||||||| |||||||| ||||||||||| ||||| | |||| Sbjct 30120 TCTCCTCGGCGGGGAATCGAACCCCAGTCTCCCGTGTGACAGGCGGGTATACTGATCACT 30179 Query 60125 ATACTACCGAGGA-TTGA 60141 ||||||||| ||| |||| Sbjct 30180 ATACTACCGGGGACTTGA 30197 >seq637 Length=379960 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/105 (79%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 60038 CAACAAATTAACGTTTATG---AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCT 60094 ||| |||| |||| || || ||||| | ||| | |||| ||||||||||| | ||||| Sbjct 289435 CAAAAAATGAACGGTTTTGTTTAAAAAATATCTTCACGGCGGGGAATCGAACGCCGGTCT 289376 Query 60095 CCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATT 60139 ||||||| ||||||| ||||| ||||||||||| | |||||| Sbjct 289375 TCCGCGTGTCAGGCGGGGATACTGACCACTATACTCCTAAGGATT 289331 >seq260 Length=892226 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| | |||| ||||| | ||||||||||| ||||||||||||||||||||| | Sbjct 341133 ATAAAAAAGTATCTCATCGGCGGAGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 341074 Query 60114 TACTCACCACTATA 60127 |||| ||||| ||| Sbjct 341073 TACTGACCACAATA 341060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571643245666040