Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq318 107 3e-18 seq805 86.0 9e-12 seq792 86.0 9e-12 >seq318 Length=663677 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | || |||||||| || ||||||||||| | |||| || ||| || Sbjct 605668 ACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCC 605609 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||||||||| ||||||||||| || || || ||||||||||| |||||||| Sbjct 605608 AGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCTTG 605550 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | | |||||||| | ||||||||||| || ||||||||||| Sbjct 606370 CCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGAC 606311 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||| || ||| || | |||||||||||| || ||||||||||| || || || ||| Sbjct 606310 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGA 606251 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| ||||| Sbjct 606250 ATGCCCTCTTTGTCTTG 606234 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||||||||||| || ||||||||||| | |||| || ||| || Sbjct 606124 ACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCCATCTTCC 606065 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||||||||| ||||||||||| || || || ||||| || ||||| ||||| Sbjct 606064 AGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTG 606006 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||||||||||| || |||||||| || | ||||||| ||| || Sbjct 605896 ACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCCATCTTCC 605837 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||| || ||||||||||| || || || ||||||||||| || || || Sbjct 605836 AGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTG 605778 >seq805 Length=567825 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| || | || |||||| | || |||||| |||| | |||| || ||| Sbjct 473801 AAAACCAAGTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGACAAGGTTCGGCCATCT 473742 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||||||||| || ||||||||||| || || || ||||| || ||||| ||| Sbjct 473741 TCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCTTTGTCT 473682 Query 146186 TG 146187 || Sbjct 473681 TG 473680 >seq792 Length=424820 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || |||||||||| | ||| || | ||||||||||| || ||||||||| Sbjct 97107 ATATTGTAGTCGGAAAGAGTTCGACCATCTTCGAGCTGTTTTCCAGCGAAGATCAATCTT 97048 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || || || ||||| || ||||| Sbjct 97047 TGCTGATCTGGGGGGATCCCTTCCTTGTCTTG 97016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743299689506560