Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq160 259 4e-64 >seq160 Length=904994 Score = 259 bits (286), Expect = 4e-64 Identities = 529/777 (68%), Gaps = 13/777 (2%) Strand=Plus/Plus Query 16050 CCAA-TTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTT-CATTAAATCACA 16107 |||| |||| || || ||||| || ||| | || ||||| ||| |||| || ||| Sbjct 788632 CCAAGTTCCTTCAGCAACCTATCAGCAACATACTCAATATA-TGTACACATTGCATTACA 788690 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||||| ||||| | ||||| | ||||| |||| ||| | || ||| || ||||| Sbjct 788691 ATTCATTCCGATTAAACTGACAGGCAGAGCTTCAGTTAGAAATTCTTGTTCGATTTTAAC 788750 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTT 16223 || ||| || |||| || | ||| | || || ||||| | ||| || Sbjct 788751 AGCATCACAAATGATAT-TCGTGATACGTTCTTGC---GACGGTTTCTGAACTAAATGAG 788806 Query 16224 TAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTG 16283 || | | || ||||| ||||||||||| ||||| ||||| || || || |||| Sbjct 788807 AGAAAAGAAGGCAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTG 788866 Query 16284 AAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAAC 16343 | || || | ||||||||| | || || || || | ||| |||||||| ||||| || Sbjct 788867 AGAAAGTTAAACCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTAC 788926 Query 16344 CAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAt 16403 |||| || ||||| ||||||||||| || || || || | ||| ||| || | || Sbjct 788927 CAGAGAAAAATATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGC 788986 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCT 16463 |||| |||||| || |||||||| || |||| ||||| ||| | | Sbjct 788987 TTTTGGAGCTTATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTT 789046 Query 16464 CTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523 | || || || || ||||| | ||||||| | || ||||| || ||||| || | Sbjct 789047 CGATGGCGTTGAACAAATATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAA 789106 Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAG 16583 |||||||||||| || ||||| |||||||| ||||| |||||||| |||||||| | || Sbjct 789107 TACTATACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAG 789166 Query 16584 CTTCGGATATTTGTA-CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 |||| | ||| || | || | || | || || || |||||||||| || || || ||| Sbjct 789167 CTTCTGGTATCTGAACCTCCTGACT-GAATCTCTCGACTAAGTTTTCATTGACAATACCA 789225 Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT 16702 || ||| || ||||| || | | || ||| |||| | |||||| | || || Sbjct 789226 TCAGAAGCAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGA 789285 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 || ||| | | ||| || | || || || || ||||| || ||||| Sbjct 789286 TTCTTCCATTGCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCT 789345 Query 16763 ACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATAC 16819 | || | ||||||| || ||||||| |||| ||| ||||||||| || ||| || Sbjct 789346 TCTGCTTCTTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATACTACAAAC 789402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462370974309800