Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq643 248 7e-61 >seq643 Length=490110 Score = 248 bits (274), Expect = 7e-61 Identities = 379/537 (71%), Gaps = 5/537 (1%) Strand=Plus/Plus Query 20023 CGATATAACTTGAGAAATGAA---TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAA 20079 || |||| ||| |||||||| ||||| |||||||| |||||| |||||||||||| | Sbjct 176465 CGTTATAGCTTACGAAATGAAATATTTCCTTTATTAACAACGAAAAGGGTATTTTGGAGA 176524 Query 20080 GGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTA 20139 |||||||| |||||| || | |||||||||| |||| || ||| | || || Sbjct 176525 GGCGTTGTCGAAGAGCTACTCTGGTTTATTAGAGGAAGTACGAATGCCTTTGAACTAAGC 176584 Query 20140 GAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGA 20199 || ||| |||| | |||||| |||| || | | | || || ||| || | ||| Sbjct 176585 GATAAAAAAGTTCATATTTGGGACGCAAATAGTACAAGACAGTTCTTAGACTCCGTTGGC 176644 Query 20200 TTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTT 20259 | | | | |||| || ||||| ||||| | ||||| |||||||||||||||||| Sbjct 176645 CTAAAAGATAGAGAAGAAGGTGATTTAGGTCCGATATATGGTTTTCAATGGAGACATTTT 176704 Query 20260 GGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAA 20319 |||||||| || | ||| | || | ||| ||||| | || || ||| Sbjct 176705 GGAGCTGAGTACAAAGGTATGCATGCAGACTATAAAAATAAAGGAATTGACCAGTTAGCT 176764 Query 20320 AATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGG 20379 |||| || ||| || ||||| | || || || ||| | || || | || || ||| Sbjct 176765 CATGTAATAAATACTATAAAAACAAGACCTAATGATAGACGCATCATAATGTGTGCATGG 176824 Query 20380 AACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATG-CCAATTTTA 20438 ||| ||| ||| | || |||||| || ||||| || ||| || | | ||| |||| Sbjct 176825 AACCCTATTGATATCCCAGAAATGGCATTACCTCCTTGCCAT-TGTTTGGTCCAGTTTTT 176883 Query 20439 CGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGG 20498 || | ||| ||||| | || |||||| | ||||||||||| || ||||||||||| || Sbjct 176884 TGTAGGAAATGATGAACTTTCATGTCAACTTTATCAACGATCTGCAGATATGGGACTTGG 176943 Query 20499 TGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTAC 20555 || ||||| |||||||| ||||| || |||| || |||||||| ||||| ||||| Sbjct 176944 AGTGCCTTTTAATATTGCTAGTTACGCTTTGCTAACATATATGATAGCACACGTTAC 177000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399065326713385