Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq160 275 6e-69 >seq160 Length=904994 Score = 275 bits (304), Expect = 6e-69 Identities = 537/786 (68%), Gaps = 8/786 (1%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 |||| || |||||| ||||| || || ||||| |||| ||||||||||| | || Sbjct 788620 ACTTGATTACAACCAAGTTCCTTCAGCAACCTATCAGCAACATACTCAATATATGTACAC 788679 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 ||| || ||||||||| || |||| | ||||| | | |||| |||||||| | Sbjct 788680 ATTGCATTACAATTCATTCCGATTAAACTGACAGGCAGAGCTTCAGTTAGAAATTCTTGT 788739 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185 || || ||||| || || ||| |||| ||| ||| | || || | | Sbjct 788740 TCGATTTTAACAGCATCACAAATGATATTCGTGATACGTTCTTGCGACGGTTTCTGAACT 788799 Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 | ||| |||| | || ||||| |||||||| | || ||||| || ||| | | Sbjct 788800 AAATGAGAGAAAAGAAGGCAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAAT 788859 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || ||||| || ||||| ||||||||||| || || || || ||||| ||||| || || Sbjct 788860 TCATTTGAGAAAGTTAAACCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCA 788919 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || || || || ||||| || ||||||||||| || |||| | |||||| | || Sbjct 788920 AAACTACCAGAGAAAAATATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAA 788979 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 | | ||||| |||||| || ||||| | | ||||| | | || | Sbjct 788980 GTGGAGCTTTTGGAGCTTATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGC 789039 Query 14426 ATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTA-GTACTTGAAATGTATGTATC 14484 || ||||| || || || || |||| ||| || ||| || | | || || || || || Sbjct 789040 ATCGTTTCGATGGCGTTGAACAAATATTCTTTTTCTGTAGGGTCCTG-TATATAGGTTTC 789098 Query 14485 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14544 || || | ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| Sbjct 789099 TATCAGAATACTATACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAA 789158 Query 14545 ACATCTAGCTTCTGACCATTGTACCT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAA 14603 || | |||||||| || |||| |||| | ||||| ||| | || |||||||| | Sbjct 789159 GCAGCGAGCTTCTGGTATCTGAACCTCCTGACT-GAATCTCTCGACTAAGTTTTCATTGA 789217 Query 14604 CTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14663 | ||||||||| ||| || ||||| || || | | ||| || | | || || | Sbjct 789218 CAATACCATCAGAAGCAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCT 789277 Query 14664 TGCTGAGTTTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14721 | ||| || ||||| | ||| | || ||| || || ||||| ||| |||||| Sbjct 789278 TAGAGAGATTCTTCCATT--GCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCA 789335 Query 14722 AAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14781 || ||| | |||| ||||||| || |||||| ||||| || |||||||| || Sbjct 789336 GAAGGAAGCTTCTGCTTCTTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATAC 789395 Query 14782 TACAAA 14787 |||||| Sbjct 789396 TACAAA 789401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482198526797240