Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq643 125 1e-23 seq784 107 3e-18 >seq643 Length=490110 Score = 125 bits (138), Expect = 1e-23 Identities = 343/524 (65%), Gaps = 30/524 (6%) Strand=Plus/Plus Query 104236 TTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGAACTCTTATGG 104295 ||||| ||| |||| || |||| || ||||||| ||| ||||| ||||| || | ||| Sbjct 176489 TTTCCTTTATTAACAACGAAAAGGGTATTTTGGAGAGGCGTTGTCGAAGAGCTACTCTGG 176548 Query 104296 TTTATTAGCGGGAGTACAGATGTTTCTGTATTAAATCAAAAAGGAGTTAAAATTTGGAAT 104355 |||||||| || ||||| ||| | || | ||| | ||| |||| | |||||| | Sbjct 176549 TTTATTAGAGGAAGTACGAATGCCTTTGAACTAAGCGATAAAAAAGTTCATATTTGGGAC 176608 Query 104356 AAAAATG---CAGAATCGTT-TTATACACAA-----CAAAATCTTTTTaaaaaaaaTGAT 104406 |||| || | ||| ||| || | | ||| | || || |||| Sbjct 176609 GCAAATAGTACAAGACAGTTCTTAGACTCCGTTGGCCTAAAAGATAGAGAAGAAGGTGAT 176668 Query 104407 TTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGGTGAAAATTATATTGGG-----T 104461 ||||| || || ||||||||||| |||||||||| ||| | | || | || | Sbjct 176669 TTAGGTCCGATATATGGTTTTCAATGGAGACATTTTGGAGCTGAGTACAAAGGTATGCAT 176728 Query 104462 GC-GATAATAAATATGGTGGTATAGATCAACTCAAAAATATTATTACAACAATTCAAAAT 104520 || || ||||| || || || || || | || | || | || || ||| Sbjct 176729 GCAGACTATAAAAATAAAGGAATTGACCAGTTAGCTCATGTAATAAATACTATAAAAACA 176788 Query 104521 GAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTAAAATG 104580 |||| |||||| | || ||| | | || |||||||| | |||| | ||||| Sbjct 176789 AGACCTAATGATAGACGCATCATAATGTGTGCATGGAACCCTATTGATATCCCAGAAATG 176848 Query 104581 GCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAATGGTAAA 104640 ||| | |||||||| |||||| | | || ||| |||| | ||||| | Sbjct 176849 GCATTACCTCCTTGCCATTGTTTGGTCCAGTTTTTTGTAGG---------AAATGAT--- 176896 Query 104641 AGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTTCCTTTT 104700 ||| | || ||||| | | |||| |||||||||||||||| | ||||| |||||| Sbjct 176897 ---GAACTTTCATGTCAACTTTATCAACGATCTGCAGATATGGGACTTGGAGTGCCTTTT 176953 Query 104701 AACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGT 104744 || || || ||||| || || ||||| |||| ||||| || || Sbjct 176954 AATATTGCTAGTTACGCTTTGCTAACATATATGATAGCACACGT 176997 >seq784 Length=324818 Score = 107 bits (118), Expect = 3e-18 Identities = 192/278 (69%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 118204 TTAGCAACAGAAAACGCAATTCCAGAATAAGAATATCTATCAATAATGACTGTAATACCA 118263 |||||| |||| || ||| ||| ||||| |||||||||||||||| | |||| ||| Sbjct 244203 TTAGCAGCAGAGAATACAACTCCTGAATATGAATATCTATCAATAACCAGAGTAACCCCA 244144 Query 118264 TTAAGAATATTTGTTTTAATTGTATCGATAATTTCCCATCTATTTTTAGAAAATAAAATG 118323 | | | | || || ||| | || | | ||||||| | |||| || ||||| | | Sbjct 244143 TCATACAGAAGTGAATTGATTTTTTCCACATTTTCCCAACGATTTGCTGAGAATAATAAG 244084 Query 118324 TGAATATCTTCATCAGACA-AATAAATTTTTCCTTT--TAAATATTGATCTATTAATTTT 118380 ||||| | | |||| | | |||| ||| ||| | ||| | || || | |||| Sbjct 244083 TGAATTGCATGATCATTTACCTTGAATTGTTCGTTTCGCAGATACTCGTCAATAAGTTTT 244024 Query 118381 CCTGTTTGTGTTGTTCTATTTGGAAAATTAATCATACGTACTTCTATAtttttttGTTTC 118440 || ||| |||| |||| || |||||||| || | | || ||||||||||| ||| Sbjct 244023 CCAGTTAGTGTAGTTCGATCAGGAAAATTCATAAGTTGGGCTGCTATATTTTTTGTTTTA 243964 Query 118441 AGTTCTTCAAATAATAATTTGCATTGAGTTGATTTTCC 118478 || | |||| |||| ||| ||||| || || ||||| Sbjct 243963 AGAGCCTCAACTAATTTTTTACATTGTGTCGACTTTCC 243926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679607116091760