Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq318 113 3e-20 seq792 95.1 9e-15 seq122 95.1 9e-15 >seq318 Length=663677 Score = 113 bits (124), Expect = 3e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| ||| ||||| ||||||||||||||||| || || | | Sbjct 605686 CCACCACGGAGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGAC 605627 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||| |||||| || ||| |||| | ||||||||| || ||| Sbjct 605626 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 605567 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| || | | || || || | | | |||||| || || Sbjct 605566 ATTCCTTCCTTATCTTGGATCT-TGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAAC 605508 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 |||| |||||| |||| || |||| ||||| ||||| || |||||| | |||| Sbjct 605507 CTCAAGGGTGATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCATTCTGAAAC 605452 >seq792 Length=424820 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| | ||| || || | || || || || || || ||||| |||||||||| Sbjct 97152 CCTCCCCTCAATCTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAA 97093 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| | ||||| || || |||| | |||||| ||||| ||| Sbjct 97092 AGAGTTCGACCATCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGG 97033 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | |||||| | | | | |||||| ||| ||| Sbjct 97032 ATCCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACC 96973 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || || | |||||| || ||||||||||| Sbjct 96972 TCGAGGGTGATGGTCTTACCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 >seq122 Length=1000354 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 20142 CACAGTTACTAAACCAACGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTT 20201 |||| || || |||||| | |||||||||||||| || |||| | |||||| |||| Sbjct 914116 CACACTTGCTGAACCAAAGGGCGTGTTGTTCCCAAGGTTCGTCAGATTCTTCCCAGTCTT 914175 Query 20202 TAAGGCCGCCATTGCAATAAAAACACAAAGTTTTATCACCGCGCGACG-TATAATAAAAT 20260 | || || ||| || || ||||| | || | || || | | || ||||||||||| Sbjct 914176 TTAGACCACCACCACAGTAGAAACAAAGTGTCTGGTCTCC-CACACCGGTATAATAAAAT 914234 Query 20261 CCCGCTTCGGCCAATTCATCGGGCCTTTGCTTCATG 20296 |||||||| ||||| ||| |||| || ||||| ||| Sbjct 914235 CCCGCTTCTGCCAAATCAACGGGTCTCTGCTTGATG 914270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379231224940785